Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 1582 bits (4095), Expect = 0.0
 Identities = 809/1402 (57%), Positives = 1036/1402 (73%), Gaps = 45/1402 (3%)

Query: 1    MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60
            M  S T +KRIRK F + P V  +P L+  Q  S+  FLQ      +R   GLQ  F SV
Sbjct: 1    MTKSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSV 60

Query: 61   FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLD-KESPSKPVV 119
            FPI   +G   LEFV+Y L  P ++  ECQQRG+T+ + L+  +RL++ D  E      +
Sbjct: 61   FPIRDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETGARSI 120

Query: 120  KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179
            +++KEQ+VYMG++PLMT  G+F+INGTERVIVSQ+HRSPGVFF+HDKGKTHSSGK LF+A
Sbjct: 121  RDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAA 180

Query: 180  RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAI--------------------- 218
            R+IPYRGSWLDFEFD KD++Y R+DRRRK+PVT LL A+                     
Sbjct: 181  RVIPYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDP 240

Query: 219  ----GLTPEQILANFFVFDNFTLMPEGAQMEFVPERLRGEVARFDITDR-DGNVIVQKDK 273
                G+T E+IL  F+   ++    +G +++F P+ LRG    FD+ D   G V ++   
Sbjct: 241  SEIAGMTSEEILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGT 300

Query: 274  RINAKHIRDLDNAKTKFISVPEDYLLGRVLAKNVVDGDTGEVIANANDEITETVLEKLRE 333
            ++  +  R L       + V  + L+GR  A+++++  +GE+ A A +E+TE +L  + +
Sbjct: 301  KVTPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADMEK 360

Query: 334  SKIKDIQTLYTNDLDQGPYISSTLRIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNR 393
            +   +++ L+ + ++ GPY+ +TL +D+   +  A I IYR+MRPGEPPT E  +ALF  
Sbjct: 361  AGFTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFKG 420

Query: 394  LFYSEDAYDLSKVGRMKFNRRVGRDEIVGPMT---LQDDDILATIKILVELRNGKGEVDD 450
            LF+  + YDLS VGR+K N R+G      P T   L+ +D+L  I+ LVEL++GKGE+DD
Sbjct: 421  LFFDSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEIDD 480

Query: 451  IDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAESENLMPHDLINSKPISSAIRE 510
            IDHLGNRRVR VGEL ENQ+R GL+R+ERA++ER+   + + +MPHDLIN+KP ++A+RE
Sbjct: 481  IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVRE 540

Query: 511  FFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 570
            FFGSSQLSQFMDQTNPLSEITHKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETP
Sbjct: 541  FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP 600

Query: 571  EGPNIGLINSLALYAHLNEYGFLETPYRKVVDGKVTDQIDYLSAIEEGRYVIAQANAAVA 630
            EGPNIGLINSLA +A +N+YGF+E+PYRKVV+G VTD++ Y+SA+EEG+YVIAQANAA+ 
Sbjct: 601  EGPNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAALT 660

Query: 631  EDGTLTDELVSSREAGETLMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDDANRALMGSN 690
            EDG   D+L+S R+A +  MV P  I Y+DV+P Q+VSVAA+LIPFLE+DDANRALMGSN
Sbjct: 661  EDGHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGSN 720

Query: 691  MQRQAVPCLRPEKAVVGTGIERTVAVDSGTTVQAFRGGVVDYVDAGRMVIRVNDDEAVAG 750
            MQRQAVP ++ E   VGTG+E  VA DSG T+ A R GVV  VDA R+VIR  +D  +A 
Sbjct: 721  MQRQAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATEDLKIA- 779

Query: 751  DVGVDIYNLIKYTRSNQNTNINQRPIVKVGDIVSRGDVLADGASTDLGELALGQNMLVAF 810
            + GVDIY L K+ RSNQ+T INQRP+VKVGD+V RG++LADG  T++GELALG+N+LVAF
Sbjct: 780  ESGVDIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAF 839

Query: 811  MPWNGYNFEDSILISEKVVADDRYTSIHIEELNVVARDTKLGPEEITRDISNLAEVQLGR 870
            MPWNGYNFEDSILISE++V+DD +TSIHIEE  V+ARDTKLG EEITRDI N+ E  L  
Sbjct: 840  MPWNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKN 899

Query: 871  LDESGIVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGM 930
            LDE+GIVYIGAEV+AGD+LVGKVTPKGE+ +TPEEKLLRAIFGEKASDV+DTSLR+P G+
Sbjct: 900  LDEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPGV 959

Query: 931  SGTVIDVQVFTREGIQRDKRAQQIIDDELKRYRLDLNDQLRIVEGDAFQRLARMLDGKVA 990
            +GTV++V+VF R G+++D+RA  I   E++    D +D+  I+EG   +RL  +L G+  
Sbjct: 960  TGTVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAILEGSFARRLKELLIGQKV 1019

Query: 991  NGGPKKLAKGTKIEQAYLQDLDHYHWFDIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEE 1050
             GGP+ +A G  I +  L       W  I + ++E A ++E +K + E+   +    FE 
Sbjct: 1020 VGGPRGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFEN 1079

Query: 1051 KRKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADG 1110
            K +KL +GDELPPGVLKMVKV++AVKR+LQPGDKMAGRHGNKGV+SKI PIEDMPY+ DG
Sbjct: 1080 KVEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDG 1139

Query: 1111 RPADVVLNPLGVPSRMNVGQVLEVHLGWAAKGLGWRIGEMLQRQAK----IAELREFLTK 1166
               D+VLNPLGVPSRMNVGQ+LE HLGWA +GLG +IG +L++  +    I +LRE L  
Sbjct: 1140 TYVDIVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDD 1199

Query: 1167 IYNESGRAEELDSFTDDEIVELAKNLREGVPFATPVFDGATEEEMSRALDLAFPDDIAKN 1226
            +Y      E+L    DD+I ELA NLR GVP ATPVFDGA E ++          D+ + 
Sbjct: 1200 VYGPRHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIV---------DMLRK 1250

Query: 1227 LGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLG 1286
             G+  S  QV L DGRTGE F+R VTVGY++ LKLHHLVDDK+HARS GPYSLVTQQPLG
Sbjct: 1251 AGL-DSSGQVTLSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLG 1309

Query: 1287 GKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMP 1346
            GKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTVKSDDV+GRTKVYE +VKGD   +AG+P
Sbjct: 1310 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIP 1369

Query: 1347 ESFNVLVKEIRSLGIDIDLDRN 1368
            ESFNVLVKE+RSLG+D++L ++
Sbjct: 1370 ESFNVLVKEMRSLGLDVELGQS 1391