Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1345 a.a., DNA-directed RNA polymerase, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1724 bits (4466), Expect = 0.0
 Identities = 869/1372 (63%), Positives = 1074/1372 (78%), Gaps = 33/1372 (2%)

Query: 1    MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60
            M YS++EKKRIRK F KRP V  +P+LL+ QL+SF  F   D +  +    GL+AAF SV
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGER----GLEAAFRSV 56

Query: 61   FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK 120
            FPI S +G + L++VSY L  P F++KECQ RG+TY + LR K+R+VL D+E+ +   VK
Sbjct: 57   FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG-TVK 115

Query: 121  EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 180
            ++KEQEVYMG+IPLMT  G+FVINGTERVIVSQLHRSPGVFF+HD+GKTHSSGK+L++AR
Sbjct: 116  DIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNAR 175

Query: 181  IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE 240
            IIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+  + ++IL  FF    F +  +
Sbjct: 176  IIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKD 235

Query: 241  GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLG 300
               M  VPERLRGE A +DI D +G V+V+  +R+ A+HIR L+   T  + VP +Y++G
Sbjct: 236  TLVMTLVPERLRGETASYDIKDAEGTVLVEAGRRVTARHIRQLEKTNTTELEVPVEYIVG 295

Query: 301  RVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRID 360
            +  A++ +D DTGEV+ +AN EI+   L KL  + IK++ TLY N+LD G YIS TLRID
Sbjct: 296  KYAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRID 355

Query: 361  ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI 420
             T +++ A + IYRMMRPGEPPT++A EALF  LF+SE+ YDLSKVGRMKFNRR+   + 
Sbjct: 356  PTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDD 415

Query: 421  VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480
             G   L  +DI+A +K ++ +RNG  EVDDIDHLGNRR+R VGE+AENQFR GLVRVERA
Sbjct: 416  EGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 475

Query: 481  VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540
            V+ERL   +   LMP DLIN+KPIS+A++EFFGSSQLSQFMDQ NPLSE+THKRR+SALG
Sbjct: 476  VRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG 535

Query: 541  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV 600
            PGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +A  N YGFLETPYRKV
Sbjct: 536  PGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKV 595

Query: 601  VDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMD 660
            VDG +TD+++YLSAIEEGRYVIAQAN  V  +G + +E ++ R  GE+  +    IQYMD
Sbjct: 596  VDGVITDEVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQIACRHKGESTFMRASDIQYMD 655

Query: 661  VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT 720
            V+P QI+SVAASLIPFLEHDDANRALMG+NMQRQAVP LR EK +VGTGIERT+AVDSG 
Sbjct: 656  VSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGV 715

Query: 721  TVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKVG 780
             V A RGGV+DYVDA R+V++VN+DE   G+ G+DIYNL KYTRSNQNT INQRP   VG
Sbjct: 716  VVAAKRGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVG 775

Query: 781  DIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840
            + V RGDVLADG STDLG+LALGQNM +AFMPWNGYNFEDSILISE+V  +DR+T+IHI+
Sbjct: 776  EPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQ 835

Query: 841  ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ 900
            EL+ +ARDTKLG EEIT DI N+ E  L +LDESGIVYIGAEV+ GD+LVGKVTPKGETQ
Sbjct: 836  ELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQ 895

Query: 901  LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK 960
            LTPEEKLLRAIFGEKASDVKD+SLRVP+ + GT+IDVQVFTR+G+++DKRA +I +  + 
Sbjct: 896  LTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIA 955

Query: 961  RYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDIR 1020
            + R DL ++ +I+E     R   +L   ++ G  +        +   +Q +D        
Sbjct: 956  QARKDLGEEFKILEEGVLSRARNLL---LSAGFSEAQIAALPRKDVLVQVID-------- 1004

Query: 1021 LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ 1080
              DE    +LE + +  E+ +  FD  FE KR+K+TQGD+L PGVLK+VKVYLAVKR +Q
Sbjct: 1005 --DEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQ 1062

Query: 1081 PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA 1140
            PGDKMAGRHGNKGV+SKI PIEDMPY   G P D+VLNPLGVPSRMN+GQVLEVHLG AA
Sbjct: 1063 PGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAA 1122

Query: 1141 KGLGWRIGEML--QRQAKIAELREFLTKIY---NESGRAEELDSFTDDEIVELAKNLREG 1195
            KG+G +I  ML  QR+  +AE+R ++ ++Y   +E  +  ++DSFTDDE++ LA NL+ G
Sbjct: 1123 KGIGHKIAAMLEDQREKGLAEVRNYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKGG 1182

Query: 1196 VPFATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGY 1255
            +P ATP FDGA E+E+ + L+LA         G+ P+  Q++L+DGRTG  FER VTVGY
Sbjct: 1183 IPVATPAFDGAKEKEIKQMLELA---------GL-PTSGQLKLFDGRTGNEFERPVTVGY 1232

Query: 1256 MHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQE 1315
            M+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQE
Sbjct: 1233 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1292

Query: 1316 MLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDR 1367
            MLTVKSDDV GRT++Y+N+V G+H +  GMPESFNVL+KEIRSLGI+I+LD+
Sbjct: 1293 MLTVKSDDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQ 1344