Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1356 a.a., DNA-directed RNA polymerase beta chain from Caulobacter crescentus NA1000

 Score = 1543 bits (3995), Expect = 0.0
 Identities = 794/1373 (57%), Positives = 1020/1373 (74%), Gaps = 22/1373 (1%)

Query: 1    MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60
            M  SFT KKRIRKSF + P   Q+P L+  Q  S+  FLQ +T    R+ EG++A F SV
Sbjct: 1    MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRETRPGLRRDEGVEAVFKSV 60

Query: 61   FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLD-KESPSKPVV 119
            FPI   N  A LE+VSY    P ++++EC QR +T+ + L+ K+RL++ + +E      V
Sbjct: 61   FPIKDFNERAVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSV 120

Query: 120  KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179
            K++KEQ+VYMG+IPLMT  G+F++NGTERVIVSQ+HRSPGVFF+HDKGKTH+SGKLLF+A
Sbjct: 121  KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180

Query: 180  RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239
            R+IPYRGSWLDFEFD KD++Y R+DRRRK+P T  L A+G+  E+IL  F+    F    
Sbjct: 181  RVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRS 240

Query: 240  EGAQMEFVPERLRGEVARFDITDRD-GNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYL 298
             G    + PER RG    F + D D G  +     +I A+  +   +   K + +  + L
Sbjct: 241  GGWATPYKPERWRGVKPEFPLVDADTGEEVAPAGTKITARQAKKFADGGLKTLLLAPEAL 300

Query: 299  LGRVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLR 358
             GR LA++ V+  TGE+ A A DE+  T ++ L +     I  L  + +  G Y+ +TLR
Sbjct: 301  TGRYLARDAVNMATGEIYAEAGDELDVTSIQALADQGFSTIDVLDIDHVTVGAYMRNTLR 360

Query: 359  IDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRD 418
            +D+ A +  A   IYR+MRPGEPPT EA EA+F  LF+  + YDLS VGR+K N R+ +D
Sbjct: 361  VDKNAIREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSSVGRVKMNMRLEQD 420

Query: 419  EIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVE 478
                   L+ +D+LA +K+LV LR+G+GE+DDID+LGNRRVR VGEL ENQ+R GL+R+E
Sbjct: 421  VSDEVRILRKEDVLAVLKVLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRME 480

Query: 479  RAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSA 538
            RA+KER+   + + +MPHDLIN+KP ++A+REFFGSSQLSQFMDQTNPLSEITHKRR+SA
Sbjct: 481  RAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA 540

Query: 539  LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYR 598
            LGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +A +N+YGF+E+PYR
Sbjct: 541  LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYR 600

Query: 599  KVVDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQY 658
            +V DGK  D++ Y+SA+EE ++VIAQ+N  VAE G + ++LV  R  GE  ++  + +  
Sbjct: 601  RVKDGKPQDEVVYMSAMEESKHVIAQSNIKVAE-GEIVEDLVPGRINGEPTLLQKETVDL 659

Query: 659  MDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDS 718
            MDV+P Q+VSVAA+LIPFLE+DDANRALMGSNMQRQAVP ++ +  +VGTG+E  VA DS
Sbjct: 660  MDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARDS 719

Query: 719  GTTVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVK 778
            G  V A R GVV+ +D  R+VIR  ++   A   GVDIY + K+ RSNQ+T INQRP+VK
Sbjct: 720  GAVVIAKRTGVVEQIDGTRIVIRATEETDPARS-GVDIYRMSKFQRSNQSTCINQRPLVK 778

Query: 779  VGDIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIH 838
            VGD +  GD++ADG ST+LGELALG+N LVAFMPWNGYNFEDSILISE++V DD +TSIH
Sbjct: 779  VGDRIVAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSIH 838

Query: 839  IEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGE 898
            IEE  V+ARDTKLGPEEITRDI N+ E  L  LDE+GIV IGAEV+ GD+LVGKVTPKGE
Sbjct: 839  IEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGE 898

Query: 899  TQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDE 958
            + +TPEEKLLRAIFGEKASDV+DTSLR+P G++GT++DV+VF R G+ +D+RA  I   E
Sbjct: 899  SPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIERAE 958

Query: 959  LKRYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFD 1018
            + R   D +D+  I+  +   RL  +L GKVA  GPK L++G +I    L  +    W+ 
Sbjct: 959  IDRLGKDRDDEFAILNRNISGRLKELLIGKVALSGPKGLSRG-EITAEGLAQVASGLWWQ 1017

Query: 1019 IRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRR 1078
            I L DE+A  +LE+++   ++ R + D  FE+K  KL +GDELPPGV+KMVKV++AVKR+
Sbjct: 1018 IALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRK 1077

Query: 1079 LQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGW 1138
            LQPGDKMAGRHGNKGV+S+I+PIEDMP++ADG   DVVLNPLGVPSRMNVGQ+ E HLGW
Sbjct: 1078 LQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLGW 1137

Query: 1139 AAKGLGWRIGEML---QRQAKIAELREFLTKIYNESGRAEELDSFTDDEIVELAKNLREG 1195
            A   LG +I  +L   Q+  +   L E LT+IY   G  EEL   T++ +VELA+NL +G
Sbjct: 1138 ACANLGKQITNLLEDWQQGGQKQALVERLTEIY---GPDEELPD-TEEGLVELARNLGKG 1193

Query: 1196 VPFATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGY 1255
            VP ATPVFDGA  +++   L++A         G+  S   + L+DG TGE F+R VTVGY
Sbjct: 1194 VPIATPVFDGARMDDIEGHLEMA---------GVNKSGQSI-LFDGLTGEQFKRPVTVGY 1243

Query: 1256 MHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQE 1315
            ++ LKLHHLVDDK+HARS GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQE
Sbjct: 1244 IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1303

Query: 1316 MLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368
            MLTVKSDDV GRTKVYE++V+GD   +AG+PESFNVLVKE+RSLG++++L+ +
Sbjct: 1304 MLTVKSDDVAGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS 1356