Pairwise Alignments

Query, 328 a.a., cytochrome d ubiquinol oxidase subunit II from Paraburkholderia bryophila 376MFSha3.1

Subject, 335 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  197 bits (502), Expect = 2e-55
 Identities = 114/326 (34%), Positives = 172/326 (52%), Gaps = 10/326 (3%)

Query: 10  LNHAWFGLIGLMLLLYVVTDGFDLGVGILTLLRSREADRDLMIQSIGHVWDANETWLVAL 69
           L+  W  +I   +++YVV DGFDLGVGIL       +DRD+M+ ++  VWD NETWLV  
Sbjct: 5   LSLIWAVIIIFGIMMYVVMDGFDLGVGILFPFVQDSSDRDVMMNTVAPVWDGNETWLVLG 64

Query: 70  GGALFGAFPQAYAMILSDLYVPVMVLIASFIMRGAAIEFR-HAAHTSKTAWDRVFGLGSL 128
           G  LF AFP AY+++LS LY+P++ ++   I RG A EFR       +  WD+ F  GSL
Sbjct: 65  GAGLFAAFPLAYSVVLSALYLPIIFMLMGLIFRGVAFEFRFKVVRERQHVWDKAFIGGSL 124

Query: 129 LAAVSQGIVLGKLLTG-------FVPGLAN--TGFVAITAVGVVSGYCLLGATWLVKKTT 179
           +A   QG+VLG  ++G       +  G  +  T F     + ++  Y LLG TWL+ +T 
Sbjct: 125 VATFFQGVVLGAFISGLPVEDRAYAGGALDWLTPFSLFCGLALIVAYALLGCTWLMMRTA 184

Query: 180 GSMESSSRRQAIIAVFTTVIAALIVSFGTLKQSPVGITRWQEHGVFHLLIALAVLAALAF 239
           G ++       I  V+  ++   IVS  T    P    RW         + + VL  L  
Sbjct: 185 GDLQRRMHDIGIPLVWAVLVVTGIVSLWTPLTHPDIAERWFSMPNLLYFMPVPVLVLLCA 244

Query: 240 VYVLYSVHMRGEHGPFFGATLLFMFSFAGLAISLFPYIVPGQLTVAEAASDSATLTFMLF 299
             +L S+     + PF     L    ++GL ISL+P I+P  +++ EAA+   +  F L 
Sbjct: 245 FGLLRSIQRYANYMPFLLTLALIFLGYSGLGISLWPNIIPPSVSIWEAAAPPQSQGFTLV 304

Query: 300 GIGIVFPIMVGYNLYQYHLFRGKVVA 325
           G  ++ P+++ Y  + Y++FRGKV A
Sbjct: 305 GALLILPLILMYTAWSYYVFRGKVSA 330