Pairwise Alignments

Query, 655 a.a., ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module from Paraburkholderia bryophila 376MFSha3.1

Subject, 1001 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Xanthomonas campestris pv. campestris strain 8004

 Score =  210 bits (535), Expect = 2e-58
 Identities = 109/311 (35%), Positives = 168/311 (54%)

Query: 324 KPAAAVTEETMVAIEGGEPVEIDAGSTREVPGPKGSLRIAGVRITNPQRVMDEVTGHTKR 383
           K A++ T  T       +     A S+        S    GV IT+P+RV+    G +K 
Sbjct: 679 KAASSKTARTPATSSARKTSTATAASSIRKARASASNAPDGVAITHPERVVFPAAGISKG 738

Query: 384 ELVEYYAAIAQWALPHLHNRPLALVRVPDGITGELFFQKHSEKARIPGVTELPPELHPRH 443
           ++  YY A+A   LP +  RPL+L+R PDG  G  FFQKH  +     +  +P +     
Sbjct: 739 DVAAYYRAVAPLVLPEIARRPLSLLRCPDGAAGACFFQKHEGRHLGAHIKAIPLKQKSGT 798

Query: 444 PPLLIANSEEALVGLAQMSVVEIHTWNAAAPDLEHPDRIIFDLDPDPALPWTAMLEAASL 503
              L       L+ L QM+ +E+H W A   D EHPDR++FDLDP   + WT ++ AA  
Sbjct: 799 EDYLYIEDVAGLLELVQMNTLELHPWGARVDDPEHPDRLVFDLDPGEGVAWTQVVAAARE 858

Query: 504 MKVALDEIGLRSFPKTSGGKGFHIAVPLTRRQGWSEAKAFAHAVAKHMARVVPQRFSAVL 563
           ++  L   GL S  + SGGKG H+ VP+  +  W +A+ F  A A+ +A   P+R+ A +
Sbjct: 859 IRSKLRAAGLESAVRLSGGKGLHVVVPIVPQASWDQARDFCEAFAQALATQAPERYVATM 918

Query: 564 GPRNRVGKIFIDYLRNSRGASTVAAFSVRARPGMGVSMPVSWDELQEIRRSDEWTMPKAI 623
               R G IF+D+LRN RG ++V ++S+RAR    V++P+ W+EL ++   D + + KA+
Sbjct: 919 SKAKRHGVIFVDWLRNGRGNTSVCSWSLRAREHATVAVPLRWEELGKLSGPDAFPLDKAV 978

Query: 624 ERQRSLKKDPW 634
           +R +  + DPW
Sbjct: 979 QRAKRQRNDPW 989



 Score =  202 bits (514), Expect = 6e-56
 Identities = 127/318 (39%), Positives = 165/318 (51%), Gaps = 7/318 (2%)

Query: 11  RVAAQADQSEGGPPALIQPQLATLVDRPPKGGDWSYEIKFDGYRVMTRIEGGIATIFTRK 70
           R  A     +   P  ++ QL  L    P G  W +EIK+DGYR++T +  G A + +R 
Sbjct: 229 RALALPGARDAACPTGLRAQLTLLRAEAPDGAQWPHEIKWDGYRLLTDLVDGRAQLRSRN 288

Query: 71  GHDWTERMPRLADACNGLQVDSAWLDGEAVVLDSSGQPDFNALQNAFDRRSTAEIVMFVF 130
              WT+  P +A A   L V  A LDGE VVLD+ G+ DF+ALQ A D  +   +   VF
Sbjct: 289 DQAWTDSFPEVATAVQALPVRDARLDGELVVLDAQGRSDFSALQRAIDGTARQPLRYLVF 348

Query: 131 DLLWLNGTDLREQPLRSRRALLRDLIAEHTSDAIRFSEDFPQDPVSLVASACKMKLEGII 190
           DLL + G DLR  PL  R+ LLR L+ E        +    + P    ASA K   EGI+
Sbjct: 349 DLLGVAGVDLRATPLLERKQLLRALLGETPGTLAYSAHVIGRGPEVFAASADK-GWEGIV 407

Query: 191 GKRGDAPYRSGRSAAWVKIKCYLRQEFVVGGFTRARGARSGVHSLLLGVHEKDGS-LRYA 249
            KR DAPYR GRSA WVK K     EFVV G+T  +GARSG  +LLL   + DG+ LRY 
Sbjct: 408 SKRADAPYRGGRSADWVKTKHEDSDEFVVVGYTDPKGARSGFGALLLA--QLDGTQLRYV 465

Query: 250 GSVRPYFSSRAATAFVARANAVRSDSAAFYNLPK--PEKERDYLWIEPSIVVECSFLEWT 307
           G V   F S       A+  A+ S       LP   P + RD  W+ P ++ E +F  W 
Sbjct: 466 GRVGTGFDSALLGEITAQLQALHSPQPTL-ELPAHIPSRPRDVHWVRPVLIAEVAFRGWA 524

Query: 308 PGGEVRHPVFHAVRDDKP 325
             G +R   F  +R+DKP
Sbjct: 525 KQGLLRQAAFKRLREDKP 542