Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, RpoE from Paraburkholderia bryophila 376MFSha3.1

Subject, 165 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 44.7 bits (104), Expect = 9e-10
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 18/143 (12%)

Query: 34  DIVQDAMIKLAEKYGDRPAAELPLLFQRILQNAMHDHFRRAKVRNTWVSLFSSLGNADDD 93
           D+ QDA +KLA+   ++          RI  N + D  RR  +          LG +D+ 
Sbjct: 38  DLAQDAWLKLAQIMPEQRLDNPKAYLFRIATNLLRDAMRRRAL----------LGASDEG 87

Query: 94  EFDPLETFEAQQGSAGAESNEQKLEREQVLQMIDDEIRKLPARQREAFLMRYWEDMDVAE 153
              PLE  EA Q    A      +E    LQ +  ++  LP R RE F +   E +  AE
Sbjct: 88  ---PLELIEAVQADPCA-----LVENHCALQCVLRQLADLPPRCREVFELARLEGLSQAE 139

Query: 154 TAAAMGCSEGSVKTHCSRATHTL 176
            A  +G S  +V    ++A   L
Sbjct: 140 IAERLGISVNTVIAQLAKARQRL 162