Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, RpoE from Paraburkholderia bryophila 376MFSha3.1

Subject, 196 a.a., putative RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.5 bits (101), Expect = 2e-09
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 58  LFQRILQNAMHDHFRRAKVRNTWVSLFSSLGNADDDEF---DPLETFEAQQGSAGAESNE 114
           LF R+ +      ++  K  +TW   F+   N   +E+   D ++ +  QQ     E + 
Sbjct: 62  LFLRVYE--ARGSYQHGKQFSTWA--FAMAYNLCKNEYRHRDIVDEYRLQQSYTNEEDSY 117

Query: 115 QKLEREQV--LQMIDDEIRKLPA----RQREAFLMRYWEDMDVAETAAAMGCSEGSVKTH 168
             LE E     Q+ D +++K+ A     QR A+ +RY E++ V E A  + C EG+VK  
Sbjct: 118 SSLEFEVAHDRQVFDRQLKKVLAGLTDEQRAAYTLRYEEELPVQEIAQILCCPEGTVK-- 175

Query: 169 CSRATHTL 176
            SR  +TL
Sbjct: 176 -SRLYYTL 182