Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, RpoE from Paraburkholderia bryophila 376MFSha3.1

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 41.6 bits (96), Expect = 8e-09
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 25/158 (15%)

Query: 28  DDDASLDIVQDAMIKLAEKYGD-RPAAELPLLFQRILQNAMHDHFRRAKVRNTWVSLFSS 86
           D + S D+ QD  IK        R  +       RI  N  +D+ R  K           
Sbjct: 44  DSELSDDLAQDTFIKAYTNLASFRNLSSFSTWLYRIAYNIFYDYIRSRK----------E 93

Query: 87  LGNADDDEFDPLETFEAQQGSAGAESNEQKLEREQVLQMIDDEIRKLPARQREAFLMRYW 146
           + + D  E D +   E  Q + G   +            +   ++ L   +R    + Y 
Sbjct: 94  MADLDTREVDAVNCTE--QANIGQTMD------------VYQSLKSLKEVERTCITLFYM 139

Query: 147 EDMDVAETAAAMGCSEGSVKTHCSRATHTLAQALKAKG 184
           ED+ + + A   G   G+VK+H SR    LA  LK  G
Sbjct: 140 EDVSIDKIAGITGIPAGTVKSHLSRGKEKLATYLKRNG 177