Pairwise Alignments

Query, 787 a.a., ATP-dependent DNA helicase UvrD from Paraburkholderia bryophila 376MFSha3.1

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  631 bits (1628), Expect = 0.0
 Identities = 357/792 (45%), Positives = 481/792 (60%), Gaps = 79/792 (9%)

Query: 4   LLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNK 63
           LL +LN  Q  AV  P    L+LAGAGSGKTRVL+ RIAWL Q   AS  +IL+VTFTNK
Sbjct: 8   LLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSILSVTFTNK 67

Query: 64  AAREMMSRLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKR 123
           AA EM  R+  LL ++ +GMW+GTFHGL +R+LRAH ++A L   FQILD+ DQ   +KR
Sbjct: 68  AAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDDQQRLVKR 127

Query: 124 LMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDVD-ATDNFNRKFVELYEAYDQQCQREG 182
           +++ L +D++++PA+  Q++IN  K++GLRP+++    D F    +++YEAY++ C R G
Sbjct: 128 VIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQPGGDLFLATQLKIYEAYEEACARAG 187

Query: 183 VVDFPELLLRCYELLAHNPPLRAHYQARFKHILVDEFQDTNKLQYAWLKLLAGQTNSIFA 242
           V+DF ELLLR  +L   +P L  HYQ RF+H+LVDEFQDTN +QYAWL+LLA    S+  
Sbjct: 188 VIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAKGGESLMV 247

Query: 243 VGDDDQSIYAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRRLG 302
           VGDDDQSIY +RGA + N+  F  +F     I+LEQNYRS   IL AAN LIANN  RLG
Sbjct: 248 VGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIANNQGRLG 307

Query: 303 KNLRTDAGHGEPVRVYESATDSQEAGWIVEEIKALISTGTSRSEIAILYRSNAQSRTIEH 362
           K L T    GEP+ +Y +  +  EA ++VE I+  I  G SRSEIAILYRSNAQSR +E 
Sbjct: 308 KELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNAQSRVLEE 367

Query: 363 TLVNAGIAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQ 422
            L+   I YR+YGG RFFER E+K+A+AYLRLI   ++D A  RV+N P RGIG +++E 
Sbjct: 368 ALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEKTVEC 427

Query: 423 LADAARLYNCSMAAAI------PYVAGKAGSSLASFANLIGKMRAETQQMSLPETVEYVV 476
           L   AR    SM AA+        V+G+A S+L  F  L+  +  + + M L    + V+
Sbjct: 428 LRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEGMQLHNMAQLVI 487

Query: 477 RASGLADFYQNER--EGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPE 534
             SGL  ++++E+  + Q R+ENL+ELV+AA AF S                        
Sbjct: 488 EQSGLLAYHRDEKGEKAQARVENLEELVSAARAFDSYS---------------------- 525

Query: 535 LAVATDDPNTVVLDAPGIADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVH 594
                                 ++ D  +PLA FL HASLEAG+ QA   +++VQLMT+H
Sbjct: 526 ---------------------EEDDDIQSPLAAFLDHASLEAGEQQAGDHEDSVQLMTLH 564

Query: 595 AAKGLEFTAVFITGLEEGLFPHENSAMESDGLEEERRLMYVAITRAKERLYLSFAQSRML 654
           +AKGLEF  VF+ G+EEGLFPH+ S  ES  LEEERRL YV ITRA ++L +++A++R L
Sbjct: 565 SAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEERRLAYVGITRAMQQLVITYAETRRL 624

Query: 655 HGQTRYNIRSRFFDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFARPDRQQGYGGG 714
           +G   YN  SRF  E+P   ++ +         + G+S                    G 
Sbjct: 625 YGSETYNKISRFVREIPPALVQEVRLSNTVTRSFNGKS------------------MSGS 666

Query: 715 ASTAAAPLPAFANEQRAAEAGFRVGQQVFHTKFGEGTITALEGGGADAKAQVKFKRHGEK 774
           +    A +P         E  F +GQ+V H+ FGEGTI   EG GA A+ QV F+  G K
Sbjct: 667 SLFDGAGVP---------ETPFSLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSK 717

Query: 775 WLALAVAKLQAV 786
           WL L+ AKL+A+
Sbjct: 718 WLMLSYAKLEAL 729