Pairwise Alignments

Query, 787 a.a., ATP-dependent DNA helicase UvrD from Paraburkholderia bryophila 376MFSha3.1

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score =  647 bits (1670), Expect = 0.0
 Identities = 357/791 (45%), Positives = 483/791 (61%), Gaps = 82/791 (10%)

Query: 4   LLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNK 63
           LL  LN +Q  AV  P E  LILAGAGSGKTRVL+ RIAWL+    ASP +++AVTFTNK
Sbjct: 7   LLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNK 66

Query: 64  AAREMMSRLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKR 123
           AA EM  R+  L+     GMW GTFHG+C+R+LRAH+ DA L   FQI+D+ DQ   +KR
Sbjct: 67  AAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126

Query: 124 LMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGV 183
           L+K  N+DD+++PA+ + ++INN K++GLRP  ++A D   + +++LY AY + C R G+
Sbjct: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRAGL 186

Query: 184 VDFPELLLRCYELLAHNPPLRAHYQARFKHILVDEFQDTNKLQYAWLKLLAGQTNSIFAV 243
           VDF E+LLR  ELL  N  +R HYQARFKHILVDEFQDTN +QYAWL+++AG  +++  V
Sbjct: 187 VDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIV 246

Query: 244 GDDDQSIYAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRRLGK 303
           GDDDQSIY +RGA V N+  F  EF   + I+LEQNYRS   IL+A+N LIANNS R+GK
Sbjct: 247 GDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGK 306

Query: 304 NLRTDAGHGEPVRVYESATDSQEAGWIVEEIKALISTGTSRSEIAILYRSNAQSRTIEHT 363
            L TD   GEP+ VY +  +  EA ++V +IK     G + ++ AILYR+NAQSR +E  
Sbjct: 307 QLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEEA 366

Query: 364 LVNAGIAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQL 423
           L+ A +AYR+YGG+RFFERQE+K AL+YLRLI+N NDDTAF RV+N P RG+G +++E +
Sbjct: 367 LLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETI 426

Query: 424 ADAARLYNCSMAAAI------PYVAGKAGSSLASFANLIGKMRAETQQMSLPETVEYVVR 477
             AAR   C++  A         + G+A S+L+ F  LI  +  E   M L    ++ V+
Sbjct: 427 RFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVK 486

Query: 478 ASGLADFYQNER--EGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPEL 535
            SGL + YQ E+  + + R+ENL+ELV A   F                           
Sbjct: 487 TSGLLEMYQQEKGEKSKARIENLEELVTATRQF--------------------------- 519

Query: 536 AVATDDPNTVVLDAPGIADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHA 595
                             +  +    MT L  FL+HA+LEAG+ QA    +AVQLMT+H+
Sbjct: 520 ------------------EKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLHS 561

Query: 596 AKGLEFTAVFITGLEEGLFPHENSAMESDGLEEERRLMYVAITRAKERLYLSFAQSRMLH 655
           AKGLEF  VF+ G+EEG+FP + SA E+  LEEERRL YV +TRA ++LY+++A+ R L+
Sbjct: 562 AKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLY 621

Query: 656 GQTRYNIRSRFFDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFARPDRQQGYGGGA 715
           GQ +Y+  SRF  ELP+  L  +  K +                   +RP          
Sbjct: 622 GQDKYHKPSRFIRELPEGCLDEVRMKAQV------------------SRP---------- 653

Query: 716 STAAAPLPAFANEQRAAEAGFRVGQQVFHTKFGEGTITALEGGGADAKAQVKFKRHGEKW 775
            T+         ++   E GF +G +V H KFGEGTI   EG G  ++ QV F   G KW
Sbjct: 654 -TSTGRFSQTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKW 712

Query: 776 LALAVAKLQAV 786
           L  A A+L+ V
Sbjct: 713 LVTAYARLEKV 723