Pairwise Alignments

Query, 787 a.a., ATP-dependent DNA helicase UvrD from Paraburkholderia bryophila 376MFSha3.1

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  446 bits (1147), Expect = e-129
 Identities = 316/863 (36%), Positives = 419/863 (48%), Gaps = 146/863 (16%)

Query: 2   PDLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFT 61
           PD ++ LNPEQ  AV     P L+LAGAG+GKTRVL TRIA ++  G A P+ ILAVTFT
Sbjct: 41  PDYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFT 100

Query: 62  NKAAREMMSRLSALLPIDTRGM-WIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSA 120
           NKAAREM  R+  L+     GM W+GTFH +  ++LR H    GL + F ILDT D +  
Sbjct: 101 NKAAREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRL 160

Query: 121 IKRLMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDV---DATDNFNRKFVELYEAYDQQ 177
           IK+L++   +DD+++PAK     I+  K +GL P  +   DA    N K  ELY AY  +
Sbjct: 161 IKQLIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNR 220

Query: 178 CQREGVVDFPELLLRCYELLAHNPPLRAHYQARFKHILVDEFQDTNKLQYAWLKLLAGQT 237
                  DF +LLL    +   NP +   Y A+F++ILVDE+QDTN  QY WL+LLA QT
Sbjct: 221 LLTLNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQT 280

Query: 238 NS-----------------------------------------------IFAVGDDDQSI 250
            +                                               I  VGDDDQSI
Sbjct: 281 QASRNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSI 340

Query: 251 YAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLRTDAG 310
           Y +RGA V N+  FE +F    +IKLE+NYRS  HIL AA  LIA+N  RLGK L T+  
Sbjct: 341 YGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERT 400

Query: 311 H--GEPVRVYESATDSQEAGWIVEEIKALISTGTSRSEIAILYRSNAQSRTIEHTLVNAG 368
           +   E V V+ +    +EA  I EEI+ L     + ++I+IL R++ Q R  E   V  G
Sbjct: 401 NPDDEKVHVHAAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLG 460

Query: 369 IAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAAR 428
           + YRV GG RF+ER E++ A+AY RL+  P DD AF R+VN P RG+G  ++  L D AR
Sbjct: 461 LNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYAR 520

Query: 429 LYNCSMAAAIPYVAGKAGSSLASFANLIGKMRAETQQMSLPETVEYVVRASGLADFYQNE 488
                 A  IP +A  A S +     L  K R                   GL D   + 
Sbjct: 521 ------ARDIPMLA--AASDIVETDELKPKAR------------------KGLFDVVADF 554

Query: 489 REGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTVVLD 548
           R  Q  LE        A   + E GY               TA  +   + + P  +   
Sbjct: 555 RRWQTLLETTPH-TELAERILDESGY---------------TAMWQADKSAEAPGRL--- 595

Query: 549 APGIADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITG 608
              + +  ++ +    + GFL H +L   D +     +AV +MT+H+AKGLEF  VF+ G
Sbjct: 596 -ENLKELIRSMEAFESMRGFLEHVALVM-DAEQNENMDAVSIMTLHSAKGLEFDTVFLPG 653

Query: 609 LEEGLFPHENSAMESD--GLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRYNIRSRF 666
            EEGLFPH+ +  E    GLEEERRL YV ITRAK R ++ F  +R +HG  +  + SRF
Sbjct: 654 WEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQSTLPSRF 713

Query: 667 FDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFARPD-------------------- 706
            DELP   ++    +V  G    G     GYG+  F + D                    
Sbjct: 714 LDELPIAHVEVAEQEVSYGGYGRG-----GYGQSRFDKADPFENNYQTPGWKRAQQHRSE 768

Query: 707 --------------RQQGYG-GGASTAAAPLPAFANEQRAAEAGFRVGQQVFHTKFGEGT 751
                          + GYG  G  T        A    A  + F VG +VFH KFG G 
Sbjct: 769 ATRDNWGTRSGHAIERIGYGESGPRTRTIEGELVAKSTSAEPSRFNVGDRVFHIKFGNGN 828

Query: 752 ITALEGGGADAKAQVKFKRHGEK 774
           I A+EG     K  + F R G+K
Sbjct: 829 IAAIEGN----KLTIDFDRAGQK 847