Pairwise Alignments

Query, 317 a.a., integrase/recombinase XerD from Paraburkholderia bryophila 376MFSha3.1

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  304 bits (779), Expect = 2e-87
 Identities = 161/291 (55%), Positives = 200/291 (68%), Gaps = 4/291 (1%)

Query: 29  IDAFCDALWLEHGLSRNTLDAYRRDLRLFSEWLAQTRNASLDTASEADLNAYSA--ARQK 86
           ++ F D +W E GL+ NT+ +YR DL    EW+AQ +   LD  S A L  Y +  + Q 
Sbjct: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYR-LDFISFAGLQEYQSWLSEQN 70

Query: 87  DKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAPD 146
            K TS  R LS  RR + +  RE     DP+  + S K P R P  LSEAQVEALL APD
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130

Query: 147 IETALGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGEEAH 206
            ++ L LRD+ MLEL+YA+GLRVTELV+L    + L +GVVRVMGKG KERL+P GE A 
Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190

Query: 207 GWIERYLRDARPALLGPRAADALFVTSRAEGMTRQQFWNIIKRHAAVAGVHA-PLSPHTL 265
            WIE +L+  R  LLG + +D +F +SR + MTRQ FW+ IK +A +AG+    LSPH L
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250

Query: 266 RHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 316
           RHAFATHLLN+GADLRVVQ+LLGH+D+STTQIYTHVA ERLK LH +HHPR
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301