Pairwise Alignments

Query, 317 a.a., integrase/recombinase XerD from Paraburkholderia bryophila 376MFSha3.1

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  186 bits (471), Expect = 8e-52
 Identities = 125/304 (41%), Positives = 172/304 (56%), Gaps = 19/304 (6%)

Query: 25  SSASIDAFCDALWLEHGLSRNTLDAYRRDLRLFSEWLAQTRNASLDTASEADLNAYSA-- 82
           S+A ++AF + +  E G + NTL +Y RDL     +L ++R   L  AS  DL +Y +  
Sbjct: 5   SAAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFL-RSRGTGLTDASADDLRSYLSHL 63

Query: 83  ARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEALL 142
           A Q  K++S  RRLS  R++Y +   E     DPT  + + K+    P TLS   V  L+
Sbjct: 64  AGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLI 123

Query: 143 GAPDIETALG-------LRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSK 195
           G  + E   G       LR   ++EL+YA+G+RV+ELV+L    +  N   + + GKG+K
Sbjct: 124 GQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNK 183

Query: 196 ERLIPFGEEAHGWIERYLRDARPALLGPRAADA--LFVTSRAEG-MTRQQFWNIIKRHAA 252
           ERL+P  + A   +  Y        L   +AD+  LF ++   G + RQ F   +K  AA
Sbjct: 184 ERLVPLSQAAIRAMRAY-----GEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAA 238

Query: 253 VAGVH-APLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHA 311
            AG+  A +SPH LRHAFA+HLL +GADLR VQ LLGH+DISTTQIYTHV  ERL  L  
Sbjct: 239 RAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQ 298

Query: 312 QHHP 315
            HHP
Sbjct: 299 NHHP 302