Pairwise Alignments

Query, 317 a.a., integrase/recombinase XerD from Paraburkholderia bryophila 376MFSha3.1

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  192 bits (489), Expect = 7e-54
 Identities = 132/299 (44%), Positives = 174/299 (58%), Gaps = 17/299 (5%)

Query: 30  DAFCDALWLEHGLSRNTLDAYRRDLRLFSEWLAQTRNASLD--TASEADLNAYSA--ARQ 85
           +AF + +  E G +R T++AY RDLR ++ +L   R   LD  T S   L AY A  A  
Sbjct: 23  EAFLEMMLAERGAARRTVEAYGRDLRDYAAFL---REKGLDGLTVSRPTLRAYLATMAAA 79

Query: 86  KDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAP 145
                S  R+LS  R+++G+ V E R   DPT+ + S +     P  LSEA+V+ALL A 
Sbjct: 80  GLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAA 139

Query: 146 DI-ETALGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGEE 204
           +  E A GLR R +LEL+Y++GLRV+ELV+L       +   + V GKG KERL+P G  
Sbjct: 140 EAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLP 199

Query: 205 AHGWIERYLRDARPALLGP------RAADALFVTSRAEG-MTRQQFWNIIKRHAAVAGVH 257
           A   +  +L  ARP  L        RA   LF +S AEG +TR  F  ++   A  AG+ 
Sbjct: 200 ARAALRDWLI-ARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGID 258

Query: 258 -APLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 315
            A +SPH LRH FA+H+L HGADLR VQ LLGH DI+TTQIYTHV  +RL +L    HP
Sbjct: 259 PARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHP 317