Pairwise Alignments

Query, 398 a.a., Site-specific recombinase XerD from Paraburkholderia bryophila 376MFSha3.1

Subject, 373 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

 Score = 67.4 bits (163), Expect = 7e-16
 Identities = 85/341 (24%), Positives = 143/341 (41%), Gaps = 44/341 (12%)

Query: 79  TVRTYAEALLPWLEFLVHQGIQLSGVTEETIGLYRASIAHQNCKKSPWRYASATVNQRVV 138
           +++T AE +  +L +  + GI+L  VT++    Y  ++     K S    +  TVN R  
Sbjct: 53  SMKTIAEHIKEFLVWSENSGIELIDVTDDVFDSYVDALCGYR-KASGVPLSWNTVNARAT 111

Query: 139 VPANFHAWGQRCTLMPSPLGAYLCTPRSVVESRVSSHRRVF---HASRLQKIAAPRVIAR 195
               +  W     L P         P  V  S     ++     H SR  K     +I  
Sbjct: 112 GAYRYLVWCYEKKLCPD------LNPIEVASSYGGLRKKYNTKGHHSREIKDHTKFLILE 165

Query: 196 TPMTLGVDELQQLFAVTSSPYRLMLR----WCVSCGLRRFEVCSLQVRDLPSTAELGNFA 251
           T +   +D L ++  V +S  RL  +    + +  GLR  EV    ++DLP     G+  
Sbjct: 166 TAVKF-IDTLSEVSGVANSEVRLRNKLIGAFMLQSGLRISEVVGFPLKDLPEVNLRGHST 224

Query: 252 DGLARLTILRKGSKELTVHVPSRLVEETHWYV------LTERPAPAANNG---HFVFLNR 302
                  ++ KG K   V +P++L+ +   YV      + E+    A N      +FL+ 
Sbjct: 225 PA----RVIGKGGKARLVLIPNKLLVKFWQYVDFDRQRVVEKIESIAGNDVVDDVLFLSE 280

Query: 303 RGGRISRQMLTREFRKSADAIGSKATLHHLRHTFALVVLSILQRHEEAGQELNPLKALQT 362
           +G R++   + + F ++++ +G K   H LRHT+       L   + AG        L  
Sbjct: 281 KGRRLTANWIEKLFTRASERLGVKTVPHVLRHTYG--TYHYLLNKDLAG--------LAN 330

Query: 363 LLGHAAIETTET-YLRAAQLSS-----DAVRDALDYLYGAS 397
           L+GH+   TT   Y+  A L S      A++D +D L GA+
Sbjct: 331 LMGHSNENTTRNFYVHTALLISYAGTYRALQDEIDRLIGAA 371