Pairwise Alignments

Query, 398 a.a., Site-specific recombinase XerD from Paraburkholderia bryophila 376MFSha3.1

Subject, 319 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 29/199 (14%)

Query: 187 IAAPRVIARTPMTLGVDELQQLFA------VTSSPYRLMLRWCVSCGLRRFEVCSLQVRD 240
           +  P++  + P  L V+E+  + +            R +L    SCGLR  E+ SL++ D
Sbjct: 109 LEGPKIGLKLPEVLTVEEIDNIISSVDRSKAEGQRNRAILETLYSCGLRVSELVSLKLSD 168

Query: 241 LPSTAELGNFADGLARLTILRKGSKELTVHVPSRLVEETHWYVLTERPAPAANNGH-FVF 299
           L        F +G  ++    KGSK+  V +  R + E   Y L         +   FVF
Sbjct: 169 L-------YFDEGFIKVE--GKGSKQRLVPISPRAINEIKLYFLDRNRIEVKKDYEDFVF 219

Query: 300 LN-RRGGRISRQMLTREFRKSADAIGSKATL--HHLRHTFALVVLSILQRHEEAGQELNP 356
           ++ RRG  +SR M+    ++ A   G    +  H  RH+FA  +L       E G  L  
Sbjct: 220 VSQRRGKSLSRIMIFHMIKELAQNAGITKNISPHTFRHSFATHLL-------EGGANL-- 270

Query: 357 LKALQTLLGHAAIETTETY 375
            +A+Q +LGH +I TTE Y
Sbjct: 271 -RAIQCMLGHESIATTEIY 288