Pairwise Alignments

Query, 597 a.a., ATP-binding cassette, subfamily B, MsbA from Paraburkholderia bryophila 376MFSha3.1

Subject, 601 a.a., ABC transporter, ATP-binding protein MsbA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  429 bits (1103), Expect = e-124
 Identities = 226/591 (38%), Positives = 368/591 (62%), Gaps = 23/591 (3%)

Query: 22  VFRRLWPFIKPLLWVIVGAIVAMAVSAGTDAAIPALLKPLLDKGF--------------- 66
           VF+RL  ++KP+  + + ++V + V    DAA  + + P +DKGF               
Sbjct: 12  VFKRLMGYLKPMKGMFLLSVVGLIVYGLVDAAFISFIGPFIDKGFSSSAPAISNGIALPT 71

Query: 67  --GAHASDNAKWFVPAAVIGLALIRGVSQYASGYLLAYVSNKILLELRLRMFDRMIHTSV 124
             G HA +      P  VI +  +RG + + S Y ++Y+S ++++++R ++F+  +   V
Sbjct: 72  SQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYLSLPV 131

Query: 125 AFFQRETASTVINAIVFEVNQILNVLLGVMVTLVRDSLTVIFLLGYLFYLNWRLTLIVAV 184
           ++  +E    +I+ + F+  QI       ++++VRDS+T+I +LG +FY +W+L+L + V
Sbjct: 132 SYMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTIIGMLGLMFYNSWKLSLCILV 191

Query: 185 LLPGIGWLVGKINRRLRRLNREHQLLTNELSYIVEETVGGYKVVKVHNGEKYEMDRFTSM 244
           + P +G ++  ++RR R+++++ Q    ++S   E+ + G+K V    G++ E  RF  +
Sbjct: 192 IGPIMGVVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETARFAKI 251

Query: 245 SKRLRGYAMRMTVSGGLAQPLTQFLASIALAVVITIAVVQSSSDQTTVGGFVAFVTSMLL 304
           + R R   M++ V+  ++QPL   + S ALA V+  A + S     T G F   + +M+ 
Sbjct: 252 NDRNRHQNMKLAVAQAVSQPLIMVIGSFALAFVLYAASLDSMKADLTAGTFATILGAMMA 311

Query: 305 IISPLKHLMDVNQPLQRGMTAAELIFGLIDEPAEPAGGGKPLERARGEVEFRNVSFMYST 364
           ++ P+K+L  VN   QRG+ A   +F L+D   E   G   + RA+G + F NVSF Y  
Sbjct: 312 MLQPIKNLTRVNAEFQRGIAACTTVFELLDTVPESDTGTYTVARAKGNLRFDNVSFSYE- 370

Query: 365 NATHNRHTLDHVSFKVAPGEMVALAGPSGSGKTTLVNLLPRFFDP-TGGEILVDGVPIGD 423
                R  L+ + F+V+ G+ +AL G SGSGK+T+ +L+ RF+     G+IL+D V I D
Sbjct: 371 --GQERRALEKIDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSIYD 428

Query: 424 YDLHALRSQIAMVSQDVVLFNDTVANNVAYGQTAD--RDKVNAALRAANLWDTVEAMPNG 481
           Y L +LRSQ+A+VSQ V LFNDT+ANN+AY    +  R+++  A   A+  + +E +P+G
Sbjct: 429 YSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAMEFIEQLPDG 488

Query: 482 IDTLVGDNGMMLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKG 541
           +DT VG+NG++LSGGQRQR+AIARA+ +DAP+LILDEATSALD+ESE+ +Q  L+ L + 
Sbjct: 489 LDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQN 548

Query: 542 RTTLVIAHRLSTIERANRILVMEAGRIAESGSHRELLAQNGLYAHLHRIQF 592
           RT++VIAHRLSTIE A++ILV++ GRI E G+H+ LL   G+YA L+++QF
Sbjct: 549 RTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQF 599