Pairwise Alignments

Query, 407 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 407 a.a., site-specific integrase from Phocaeicola vulgatus CL09T03C04

 Score =  405 bits (1040), Expect = e-117
 Identities = 203/404 (50%), Positives = 276/404 (68%), Gaps = 3/404 (0%)

Query: 1   MERTTFCLLFYIRRTKLNRNGEAPIMMRITVNGVRVDASVKKTILPEFWSAAKGKALEKK 60
           M+R  F +LF+I+++KL +NGEAPI MRITVNG R +  +K+++    W++ K     K 
Sbjct: 3   MQRNYFTILFFIKKSKLLKNGEAPICMRITVNGQRAEIQIKRSVEVSKWNSQKECTAGKD 62

Query: 61  REYKELNLYLDSIRLRIMKIQRELEIEEVSVSANSVLDRFLGK-DAPVQRTLFEVFREHN 119
           R+  ELN YLD++R +++KI RELE +   ++A+ +  R+ G+ D+P  + L EVFREHN
Sbjct: 63  RKAMELNHYLDTVRTKVLKIHRELEQDGKPITADILKRRYYGEGDSP--KMLLEVFREHN 120

Query: 120 DKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEK 179
            K  +L G D    TV RYE + ++  + + + Y   D+ L E++ +FI  +E ++KTEK
Sbjct: 121 RKYRELMGKDYVAGTVLRYERTARYLEELLQKEYGMNDIPLKEINHEFITKFEHYVKTEK 180

Query: 180 KCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRFSLDKVEPDFLEDSEIQKLISKEI 239
            C  N A KYLKN KKII+ AL   W+ +DPFLEI F   +    FL + E+  L+ KE 
Sbjct: 181 SCAQNAAVKYLKNLKKIIKTALVNKWITDDPFLEIHFKQTRTNRAFLTEEELGILLKKEF 240

Query: 240 DIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLME 299
            IPRL  VRDIFVFC  TGLAF+D+  L+ +HI++D NG  WIRK R+KT  MC+IPL++
Sbjct: 241 TIPRLQTVRDIFVFCALTGLAFTDVQHLKHDHIIKDGNGEYWIRKAREKTDNMCDIPLLD 300

Query: 300 IPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFA 359
           IP  ILEKY  +  C K GVL PV  NQ+MN+YLKE+AD CGI K L+THV RHTFAT A
Sbjct: 301 IPRMILEKYKGHPECMKKGVLLPVPSNQRMNSYLKEIADTCGITKPLSTHVARHTFATVA 360

Query: 360 LANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDF 403
           LAN VS+ESVAKMLGHT+++ TR YAR+LD+TV  EM  ++  F
Sbjct: 361 LANRVSMESVAKMLGHTDIRTTRIYARILDKTVSEEMKGMRSKF 404