Pairwise Alignments

Query, 407 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 411 a.a., site-specific integrase from Phocaeicola vulgatus CL09T03C04

 Score =  240 bits (613), Expect = 5e-68
 Identities = 136/399 (34%), Positives = 225/399 (56%), Gaps = 6/399 (1%)

Query: 3   RTTFCLLFYIRRTKLNRNGEAPIMMRITVNGVRVDASVKKTILPEFWSAAKGKALEKKRE 62
           ++TF ++FY++R  + ++G  P+M RITV+G +   S K ++ P+ W    G+   +   
Sbjct: 2   KSTFSVIFYLKRQVVKKDGTVPVMGRITVDGSQTQFSCKLSVDPKLWDTKGGRVTGRSTA 61

Query: 63  YKELNLYLDSIRLRIMKIQRELEIEEVSVSANSVLDRFLGKDAPVQRTLFEVFREHN-DK 121
             E N  LD +R+RI K  +E+   +  V+A  V + FLG +     TL +VF  HN D 
Sbjct: 62  ALETNRLLDKMRVRINKHYQEIMERDNYVTAEKVKNAFLGLEHRYH-TLMQVFSRHNEDY 120

Query: 122 CVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKC 181
             Q+     A AT+ +Y+T  KH ++F+   YH KD+ L E++  FI D+E +L+T+K C
Sbjct: 121 EKQVEAGMKAKATLSKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTDKHC 180

Query: 182 CHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRFSLDKVEPDFLEDSEIQKLISKEIDI 241
           C NT   Y+   + ++ IA+   W+  DPF E     ++    FL   EI++L+  ++  
Sbjct: 181 CTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTRSFLTKDEIRQLMEGKLKN 240

Query: 242 PRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIP 301
            +    RD+++FC FTGL+F+D+  L +E+I    +   WI   RQKT ++ NI L++I 
Sbjct: 241 AKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWININRQKTGMVSNIRLLDIA 300

Query: 302 LKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFA-L 360
            +I++KY     C + G +FPV         ++ +A  CGI K +T H  RHT  T   L
Sbjct: 301 KRIIDKY--RGLC-EDGRIFPVPHYMTCLYEIRAVAKRCGITKHITWHQSRHTATTTVFL 357

Query: 361 ANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQI 399
           +NGV IE+V+ MLGH +++ T+ YA++    + ++M  +
Sbjct: 358 SNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENL 396