Pairwise Alignments

Query, 407 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 406 a.a., site-specific integrase from Phocaeicola vulgatus CL09T03C04

 Score =  164 bits (415), Expect = 4e-45
 Identities = 115/398 (28%), Positives = 197/398 (49%), Gaps = 28/398 (7%)

Query: 9   LFYIRRTKLNRNGEAPIMMRITVNGVRVDASVKKTILPEFWSAAKGKALEKKREYKELNL 68
           L Y R+  LNR G A + +   +N  ++       + PE WS  +G  +    +  ELN+
Sbjct: 8   LVYNRQNTLNRQGTALVQVEAYLNQRKIYLKTNVYLKPECWSR-EGAQVINHPQSNELNI 66

Query: 69  YLDSIRLRIMKIQRELEIEEVSVSANSVLDRFLGKDAPVQRTLFEVFREHNDKCVQLSGT 128
            L    L +  I  EL   +  + A   L +   K        F  F +       +  +
Sbjct: 67  MLYEYILYLQGI--ELGYWKRGIPATLSLLKDAVKKKSAVNISFSTFAKS-----AIDNS 119

Query: 129 DMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTATK 188
           D   +T     ++L    DF      +  +   +++  F+ D+E +L+ EK    NT  K
Sbjct: 120 DKKQSTKDNLHSTLAVLHDF------RSGLDFKDLTYTFLRDFEQYLR-EKGNAVNTIAK 172

Query: 189 YLKNFKKIIRIALAKGWMKND--PFLEIRFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 246
           +++  + ++  A+ +G+M  D  PF + +   +K   +FL   E++KL + E++   +  
Sbjct: 173 HMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEESMRH 232

Query: 247 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEI----PL 302
           V D F+FCC+TGL +SD   L  E+ +   NG RW+     KT +   +PL  +     L
Sbjct: 233 VLDAFLFCCYTGLRYSDFCQLTPENFIR-INGKRWLYFKSVKTGVEIRLPLHLLFESRAL 291

Query: 303 KILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALAN 362
            IL++Y         G    + CN ++N  L++LA++CGIKK +T HV RHT AT  +  
Sbjct: 292 GILDRYPDI------GSFAALPCNSEVNKQLRKLAELCGIKKRITYHVSRHTCATLLVHQ 345

Query: 363 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIK 400
           GV+I +V K+LGHT+V+ T+ Y+ VL  T++R++  ++
Sbjct: 346 GVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQ 383