Pairwise Alignments

Query, 407 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 404 a.a., site-specific integrase from Phocaeicola vulgatus CL09T03C04

 Score =  159 bits (402), Expect = 1e-43
 Identities = 116/399 (29%), Positives = 198/399 (49%), Gaps = 30/399 (7%)

Query: 9   LFYIRRTKLNRNGEAPIMMRITVNGVRVDASVKKTILPEFWSAAKGKALEKKREYKELNL 68
           L Y R+  LNR G A + +   +N  ++       + PE WS  +G  +    +  ELN 
Sbjct: 8   LVYNRQNTLNRQGTALVQVEAYLNQRKIYLKTNVYLKPECWSR-EGAQVINHPQSNELNA 66

Query: 69  YLDSIRLRIMKIQRELEIEEVSVSAN-SVLDRFLGKDAPVQRTLFEVFREHNDKCVQLSG 127
            L    L +  I  EL   +  + A  S+L   + K + V  + F   +   D       
Sbjct: 67  MLYEYILYLQGI--ELGYWKRGIPATLSLLKDAVKKKSTVNVSFFTFAKSAIDN------ 118

Query: 128 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 187
           +D   +T     ++L    DF      +  +   +++   + D+E +L+ EK    NT  
Sbjct: 119 SDKKQSTKDNLHSTLAVLNDF------RSGLDFKDLTYTSLRDFEQYLR-EKGNAVNTIA 171

Query: 188 KYLKNFKKIIRIALAKGWMKND--PFLEIRFSLDKVEPDFLEDSEIQKLISKEIDIPRLS 245
           K+++  + ++  A+ +G+M  D  PF + +   +K   +FL   E++KL + E++   + 
Sbjct: 172 KHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEESMR 231

Query: 246 QVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEI----P 301
            V D F+FCC+TGL +SD   L  E+ +   NG RW+     KT +   +PL  +     
Sbjct: 232 HVLDAFLFCCYTGLRYSDFCQLTPENFIR-VNGKRWLYFKSVKTGVEIRLPLHLLFESRA 290

Query: 302 LKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALA 361
           L IL++Y         G    + CN ++N  L++LA +CGIKK +T HV RHT AT  + 
Sbjct: 291 LGILDRYPDI------GSFAALPCNSEVNKQLRKLAGLCGIKKRITYHVSRHTCATLLVH 344

Query: 362 NGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIK 400
            GV+I +V K+LGHT+V+ T+ Y+ VL  T++R++  ++
Sbjct: 345 QGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQ 383