Pairwise Alignments

Query, 325 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 381 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  117 bits (294), Expect = 3e-31
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 8/220 (3%)

Query: 103 YYLIDSSQMTSAPFI--VKADKGDKATVELPDGTNVVLNSASQLSYLNNFGEKVRRVQLN 160
           Y ++++   ++ P    +    G +  V LPDGT V LN+ S L Y   F  K R V+L 
Sbjct: 158 YTILENKSGSAKPGFNTISTPAGGQYQVTLPDGTKVWLNALSSLKYPTTFLGKYRMVELA 217

Query: 161 GEAYFKVAPDEKHAFIVQVGDLEVKVLGTSFNVSAYEDAKDITVVLLEGKVGI--YTQET 218
           GE YF+VA ++   F ++    E+ VLGT FNVSAY D  ++   L+EG V +  ++   
Sbjct: 218 GEGYFEVAKNKNKPFKLKTAKQEISVLGTHFNVSAYADDTEVKTTLVEGGVAVKNFSPLA 277

Query: 219 SRMMKPGDKIEYNKTTHQLVATQVHPNDYIEWTKGNIYFEKESLENIMKTLSRIYDVEIR 278
           + ++KPG +  + KT  ++  + V   +YI W  G   F  E ++  M+ L+R YDV+I 
Sbjct: 278 TGLLKPGQQAVFEKTGFKV--SNVDVEEYIAWKNGFFMFNNEDIKAAMQKLARWYDVDIE 335

Query: 279 FDSNKLPKEYFTGTIPS-GGIQNALNILMLTSPFYYEMDG 317
           +  +     YF G+      +Q  L IL  T  F ++++G
Sbjct: 336 YVGD-FDGIYFGGSFSKHNNLQETLKILESTDKFKFKIEG 374



 Score = 31.2 bits (69), Expect = 4e-05
 Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 14/145 (9%)

Query: 1   MDKIHYKELIEKYFEGNIADTEIKELSDWIKNDRQLQNWWEQEFTKSDAAIDPILRDKLF 60
           M K     L EKY  G  ++ E  +L  W  N   L++   ++  + D      + +K+F
Sbjct: 1   MKKAELIRLTEKYVAGTASEEERLKLESWYNNQLDLKSLTGEK--QIDEEEQTEVGEKIF 58

Query: 61  ARIKEGTLKHTSPRTKGVRTLPMIPWRWVAAILLPVCIAFFTYYLI----DSSQMTSAPF 116
            +I +   +    R       P   +  +A     + +  F ++L+    D  ++ ++  
Sbjct: 59  NKINQQIDQQEIKR-------PNRYFYRLAVAASFIAVLGFGWFLLSERTDVKKINTSAS 111

Query: 117 IVKADKGDKATVELPDGTNVVLNSA 141
           ++K   G+KA + L DGT + L+ A
Sbjct: 112 LIKPG-GNKAFLTLADGTKINLDQA 135