Pairwise Alignments

Query, 325 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 373 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  114 bits (286), Expect = 3e-30
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 106 IDSSQMTSAPFIVKADKGDKATVELPDGTNVVLNSASQLSYLNNFGEKVRRVQLNGEAYF 165
           I ++   S    +   +G +  V LPDGT V LN+A+ L Y   F +  R V+LNGEAYF
Sbjct: 154 IPNAAAISGSNTIATPRGGQYQVSLPDGTKVWLNAATTLKYPYAFAKNERVVELNGEAYF 213

Query: 166 KVAPDEKHAFIVQVGDLEVKVLGTSFNVSAYEDAKDITVVLLEGKVGIYTQETSRMMKPG 225
           +V+ D    F V+     V+VLGT FNV+AY D   +   LLEG V +     +  + PG
Sbjct: 214 EVSKDHTRPFRVKTDAQTVEVLGTHFNVNAYGDEPMVKTTLLEGAVKVSAASATVNLHPG 273

Query: 226 DKIEYNKTTHQL-VATQVHPNDYIEWTKGNIYFEKESLENIMKTLSRIYDVEIRFDSNKL 284
           ++ ++N    +L V  QV  +  + W      F+ + L+ +M+ +SR YDV++ +     
Sbjct: 274 EQSQFNAYNARLSVNQQVDIDKEMAWKNNIFSFDNDDLQTVMRQISRWYDVDVVYQGKIR 333

Query: 285 PKEYFTGTIP-SGGIQNALNILMLTSPFYYEMDGSVIVL 322
           P++Y  G IP +  +     IL L +  + E+ G ++ +
Sbjct: 334 PEKY-VGEIPKNSNLAEVFKILEL-NHVHIEVKGKILTV 370



 Score = 39.7 bits (91), Expect = 1e-07
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 27/162 (16%)

Query: 7   KELIEKYFEGNIADTEIKELSDWIKNDRQLQNWWEQEFTKSDAAIDPILRDKLFARIKEG 66
           K+L++KY  GN    E+  + DW      LQ  +++E   S A I+           K+ 
Sbjct: 6   KKLLDKYLAGNCTPEEVTIIEDW-----YLQLTFQKE-APSHALIE---------SSKQE 50

Query: 67  TLKHTSPRTKGVRTLPMIPWRWVAAILLPVCIAFFTYYLIDSSQMTSAPFIVKAD----- 121
                SPR++ ++ + +  +   A+I+L  C +   Y+++   Q  +     K +     
Sbjct: 51  VWNQLSPRSRSLKMVMVKRFAIAASIIL--CFSLGLYFIV---QRNATSLTAKTELKDIL 105

Query: 122 -KGDKATVELPDGTNVVLNSASQLSYLNNFGEKVRRVQLNGE 162
             G +A + L DGT V L+ A      N  G  +R+ + NG+
Sbjct: 106 PGGHQAVLTLADGTVVDLDDAKNGQIANQNGIIIRKAK-NGQ 146