Pairwise Alignments

Query, 325 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 385 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  122 bits (306), Expect = 1e-32
 Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 9/217 (4%)

Query: 113 SAPFIVKADKGDKATVELPDGTNVVLNSASQLSYLNNFGEKVRRVQLNGEAYFKVAPDEK 172
           SA   ++  KG +  V+LPDGT V LN+AS L +   F  K R+V L GE YF+VA D+ 
Sbjct: 173 SAYNTIETPKGGQYLVKLPDGTQVWLNAASSLKFPLAFSAKERKVVLTGEGYFEVAKDKS 232

Query: 173 HAFIVQVGDLEVKVLGTSFNVSAYEDAKDITVVLLEGKVGIYT---QETSRMMKPGDKIE 229
             F V  G+  V+VLGT FN+++Y D  +I   L+EG+V +++     T  ++ PG +  
Sbjct: 233 KPFRVMSGNQMVEVLGTHFNINSYADEGNIKTTLVEGRVKVHSAAKTNTDLILVPGQQA- 291

Query: 230 YNKTTHQLVATQVHPN--DYIEWTKGNIYFEKESLENIMKTLSRIYDVEIRFDSNKLPKE 287
               T QL++   +PN  + I W +G+  F   SL +IM+ LSR YDV++ F   ++P  
Sbjct: 292 --INTGQLMSLNANPNIEEIISWKEGSFQFNDSSLSSIMRQLSRWYDVDVEF-VGQVPDY 348

Query: 288 YFTGTIPSGGIQNALNILMLTSPFYYEMDGSVIVLKE 324
           +F G I        +  ++ T    + ++G  I++++
Sbjct: 349 HFRGRISRDTPITQIFEILKTGGLNFTIEGRRIIVRD 385