Pairwise Alignments

Query, 416 a.a., outer membrane efflux protein precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 420 a.a., Outer membrane protein from Sphingomonas koreensis DSMZ 15582

 Score = 63.9 bits (154), Expect = 8e-15
 Identities = 69/325 (21%), Positives = 119/325 (36%), Gaps = 20/325 (6%)

Query: 23  AFAQMPEIKLGQSISFEEYLNRVAKKNLSYLAEKLNVSIADAEVIARKIFPDPELEFEAG 82
           A AQ P  + G  ++ EE + R    + +     L +  A+AE     + P+P L+ E G
Sbjct: 18  AQAQTPSAEAGDVMTLEEAVRRAGATSPANAVAALGIETAEAERRVAALRPNPTLDAEVG 77

Query: 83  N-------------ETFSLGVSYSLEMGNKRGARIKLARTQAELEKLVLQQGFQDLRAEA 129
           N             ET ++G +  LE+G KR ARI +A  Q    ++  Q    DLR + 
Sbjct: 78  NVIGTGPYRGFSEAET-TIGFALPLELGGKRAARIGVADAQTARARIDQQAAIADLRLQV 136

Query: 130 ADLFLEAILQRELLEVQKSSYEYMYQLSQSDSLRYVSGEITENDVRQSKLETVTLLNTVY 189
              ++EA+     L + +       +  +    R ++G     D +++ L +        
Sbjct: 137 TQAYIEAVTAERRLAIAEDQVRVTAENLRIARDRVMAGANAPIDEQRAALLSSNATAEAE 196

Query: 190 SQEAAYHSALVLLNKHMGMSADTLHIPLGNWEELSRDFALSDLVKAGLDNRIDLLVAQKS 249
                  +    L    G     L  P   W +          +    +  + L  A   
Sbjct: 197 RAGRTVDTTRTALAHLTGARPSGLDQP---WFDRVAPVQAGPQLPVPTEGTLALAAASAD 253

Query: 250 TEVTTREYKLTRAERRPDIGVSVSYERNWNGFLPPSRSATAGVSVPLTFSNINKGAVKAA 309
                   +L R++R PD+ +S    R          +   GVS+P+   N  + AV  A
Sbjct: 254 LRTADAGLRLARSQRVPDLTLSAGTRRLQ---ASGDMAMVFGVSMPIPVFNNGRAAVDRA 310

Query: 310 KFRIAQSEIMERDMELQIQTEITQA 334
                QS+   R +  + +  I  A
Sbjct: 311 AALRNQSDAQRRLVRFETERAIAAA 335



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 289 TAGVSVPLTFSNINKGAVKAAKFRIAQSEIMERDMELQIQTEITQAWFNYEAEKKKIAQY 348
           T G ++PL         +  A  + A++ I ++     ++ ++TQA+      ++++A  
Sbjct: 94  TIGFALPLELGGKRAARIGVADAQTARARIDQQAAIADLRLQVTQAYIEAVTAERRLA-- 151

Query: 349 KAGVLEDSQKV 359
              + ED  +V
Sbjct: 152 ---IAEDQVRV 159