Pairwise Alignments

Query, 416 a.a., outer membrane efflux protein precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 454 a.a., RND transporter from Cupriavidus basilensis FW507-4G11

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 38/182 (20%), Positives = 83/182 (45%), Gaps = 3/182 (1%)

Query: 229 LSDLVKAGLDNRIDLLVAQKSTEVTTREYKLTRAERRPDIGVSVSYERNWNGFLPPSRSA 288
           L +L    + NR+D+   +  T+       LT+A R  ++ + V Y RN     PP    
Sbjct: 272 LGELEGYAMQNRLDIQAGKLQTQSVASSLGLTKATRFINV-LDVGYLRNSLSNTPPETGY 330

Query: 289 TAGVSVPLTFSNINKGAVKAAKFRIAQSEIMERDMELQIQTEITQAWFNYEAEKKKIAQY 348
              V +PL      + A   A + +A +++ +    +  ++E+ +++ +Y+        Y
Sbjct: 331 EISVQIPLFDWGSARVARAEAVYMLAVNQLAQ--TAINARSEVRESYASYQTSYDIARHY 388

Query: 349 KAGVLEDSQKVLDGMVYKYKRGETSILDVLVAQRTYNEVQQEYLETMKGYAASLVALERA 408
           +  V+   + ++D M+ +Y     S+ ++LV  R   +    Y+ +++ Y  +   L+R+
Sbjct: 389 RDEVVPVRKAIVDEMMLRYNGMLASVFELLVETRAQVDGVNTYIGSLRDYWVAETDLQRS 448

Query: 409 CG 410
            G
Sbjct: 449 LG 450