Pairwise Alignments

Query, 702 a.a., heparinase III protein, heparitin sulfate lyase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 662 a.a., heparinase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  280 bits (717), Expect = 1e-79
 Identities = 186/657 (28%), Positives = 323/657 (49%), Gaps = 38/657 (5%)

Query: 45  VDPQVFEAINLNYPGLEKVKEFYEAGEHYYAANALLEYYRTRTNVTNPNLSLINVTISEA 104
           V    F+ +NL+  GLEKVK    A ++   A  LL+YYR+RTNV +  L      I + 
Sbjct: 28  VSKSSFDVVNLDAKGLEKVKHLVAAAKYEEGAKELLKYYRSRTNVRH--LDFDTDEIKKL 85

Query: 105 EQAKADYALVDYRFHVNNFYEDK-ETLKPYSVKQDGG-INWEYSPKDASDEYQKQ-LHRH 161
              K +   ++     NN  + K +  K Y     G  INW+Y P    D+     LHR 
Sbjct: 86  AGKKVNENTLEL---ANNILQHKFKPHKGYPTFDYGKEINWQYRP--VQDQLLTTFLHRT 140

Query: 162 QWFIPQAKAYRVSGDEKYIQSWIEVYKNWIENNPKPTTGPNTT-SWWQLQVSTRIGDQVQ 220
            ++ P    Y+ +GDE+Y + WI   ++W++ N +     +   +W    VS R+     
Sbjct: 141 AFWEPLGIVYQSTGDEQYAKEWIFELRDWVKKNKQGAYADDKDYAWKAFVVSFRLNHWSG 200

Query: 221 LLEYFKNSVNFTPEWLSTFLVEFAEQADFLVDYPYESGGNILISQANALATAGTLMPEFK 280
               F NS NFTP +L  FL  ++ QAD+++   Y   GN  + +A  +  AG+  PE K
Sbjct: 201 YFNLFLNSPNFTPAFLMEFLNSYSAQADYVMAN-YTDIGNHRLYEALHMMYAGSTFPEMK 259

Query: 281 NAEKWMNTGYQILSEEVQNQIMSDGWHKEMSLHYHIGIVADFYEAMKLAEANQLSSKLPS 340
            A  W  +G  +L+EE++ QI+ DG   E+S  YHIG +  F +A+++A+ N  +++ P 
Sbjct: 260 QAANWRKSGITVLNEEIKKQILPDGVQFELSPSYHIGSIKIFLDALQIAQLNGAAAEFPE 319

Query: 341 DFTEPLRKAAEVVMYFTYPNYFIKGSDNVVPMFNDSWSRTRNVLKNTNFKQYVEMFPDSE 400
            +     K    V  +++P+Y         P++ +++  T+  +   ++  + ++FP ++
Sbjct: 320 SYRNLAEKMVLAVGKYSFPDY-------TFPLYGNAFLTTKAAMLK-SYALWTKVFPKNK 371

Query: 401 ELKYMQTAGNGGTAQGRTPNNDMKLFDQAGYYVLRNGWTPASTVMILSNNKSNDASNSLS 460
            ++Y  T G  GTA    P+        AG+Y  R+GW   +TVM +             
Sbjct: 372 VIEYYATDGKTGTA----PDYRSGSLPNAGFYAFRSGWDMKATVMQIKAGP--------P 419

Query: 461 AYSHNQPDNGTFELYHNGRNFFPDSGVCTYYTSGGD-NDLRYWFRGIDKHNTLSIGKQNI 519
           A  H+ PDNG F L+  GR+F PD+G   Y   G   N  R W+R    H TL+I  + I
Sbjct: 420 AAFHSHPDNGNFVLWVKGRDFTPDAGSFVYANVGDQANTKRDWYRSTKAHQTLTIDDKTI 479

Query: 520 KKAAGKLLKSEEGAT-ELVVFENQGYDNLKHRRAVFYVNKKFFVLVDEGIGNAEGTINLS 578
           +  A KL K E G   +++ + N  Y +L H+R   +++K +FV++D  IG A G + + 
Sbjct: 480 ENDA-KLQKWETGNNLDILSYSNPSYKDLNHQRTFLFIDKTYFVIIDRAIGAATGKLAIR 538

Query: 579 FNLCEGTASEVVMDTDKNGVHTAFSNNNNIIVRTFANKAVTCSPFTGRIAYLVDGAYNTR 638
           ++L E   S+  ++   N + T +++ NN++++      V+       ++Y+       R
Sbjct: 539 YHLKED--SQATLNASNNRITTNYADGNNLLIQVLNKDKVSVKEEPSFVSYVYQ-KETPR 595

Query: 639 QSYTIDMNKSADETARYITVILPVNGSTDTSSISAKFIDSGYSENSASVEVSVNGET 695
            ++  +  K+  +T  +I+V+ P NGST       +     ++     + +++NG+T
Sbjct: 596 PAFAFEKAKADGKTQAFISVLYPYNGSTPPVVNFTENPGHDFANGKIDITLNINGKT 652