Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1060 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  603 bits (1555), Expect = e-176
 Identities = 386/1086 (35%), Positives = 586/1086 (53%), Gaps = 85/1086 (7%)

Query: 15   LFTLLALIMSISLHAQNATVKGVIVDETDTP-LIGATVQVKGTATGSITDFDGNYTIKA- 72
            LFT L+ I      AQN  + G + D+ D   L+G +V + GT  G+ TD +G + I   
Sbjct: 7    LFTFLSFIGLSVAQAQNRQLTGTVKDKKDGQVLVGVSVSLSGTKNGTSTDANGVFKISIP 66

Query: 73   NKGAVITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVV-VGYGTMKRSDLTGSVAS 131
              G+V+TF+YIGYKT+ +  T ++ L+V +  D   L+EV V VGYG +++ DLTG+V S
Sbjct: 67   TNGSVLTFTYIGYKTKNVTVTNETKLSVTLDEDANNLEEVTVNVGYGIVRKKDLTGAVGS 126

Query: 132  IAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDG 191
            ++A  +     SS   A+ G++AG+ I+S++G+P A  ++ +RG G++TGD+SPLYIVDG
Sbjct: 127  VSADVIAAAPVSSALEAIQGRVAGINISSSEGSPDAQINVRVRGGGSITGDNSPLYIVDG 186

Query: 192  FEVDDIDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGSASY 251
            F V  I  ++  DIESI++LKDASS+AIYGAR ANGV+L+TTK+ K G+  I+YN     
Sbjct: 187  FPVASISDIAPQDIESIDLLKDASSTAIYGARGANGVILVTTKNSKDGKTNISYNVFGGT 246

Query: 252  RKISKKLDVLSPYEFVKLQGE---VNSKYSDSYFKPGNDDNDIPYRYQSLDDYMGVKGVN 308
            RKI+KKL VLS  ++V  Q E   ++   +D     GN        YQ +D Y  V   N
Sbjct: 247  RKIAKKLGVLSASDYVHWQYERALLDGSLTDYTQYFGN--------YQDIDLYNNVAENN 298

Query: 309  WQDETFNPTWSQ-DHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKLS 367
            WQD  F  T +  + +LSI GG+D +KY+ S S   +  I + S F +    F+L  KL 
Sbjct: 299  WQDLVFGRTGTTFNQNLSITGGSDKTKYSLSHSLVNDKAIMQMSDFKRQNINFKLTHKLY 358

Query: 368  KSLSFNITVNYALTNRKGVG-------TSADSGRFNMLAQILSARPTGGLKLTDDELLDS 420
             +L+ +    Y+ T   G G       +SADS      A +  + P  GL  + D     
Sbjct: 359  NALALDFGFRYSDTKTNGGGANEQNEKSSADSRL--KYAILYPSFPVPGLTASTD----- 411

Query: 421  AIDPEMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTAGTYNTTN 480
                    + +     NP+            + ++ NG+ +++II  L  ++   Y+   
Sbjct: 412  --------TNDEFNLYNPLVAISDNDQYVHRKAYNINGAATYEIIDNLKLRSEVGYDGLR 463

Query: 481  NRTNIFYKDGSKEAYRNGQKPYGRTQMGRDVRWT-----NFNNLTW---KQKVKKHNYDV 532
            N  + FY  G    Y      Y        +  T     N N L +   K   K HN +V
Sbjct: 464  NDQDRFY--GITTYYVKNLADYPNLPTLSSMNTTRNSFRNTNTLNYSFSKILDKNHNLNV 521

Query: 533  MLGHEVSFRSTEYLLGEAMDFP----FDNLGNDYLGLGATPSKVESSYS-EKMLLSFFAR 587
            +LG E        L  E   FP    FD      L      S +++++S +  L SFF R
Sbjct: 522  LLGQEFIKTEQNILTNEVHGFPKTFTFDQ--TRVLTTQGKASIIDNNFSPDDKLFSFFGR 579

Query: 588  GNYNYDNRYLLTATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDV-DWVSNFKVR 646
             NY+Y  +YLL+AT RADGS+ FS++N WG+FPS SA WR+S+E FM     W+++ K+R
Sbjct: 580  ANYDYKGKYLLSATFRADGSSKFSSENHWGYFPSVSAGWRISQEDFMNSTKSWLTDLKLR 639

Query: 647  LGWGIVGNDRI-SNYLSMDLYEASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINLGVDL 705
              +G  GN+ I    ++     ++   +          K + N +LKWE + T N+G+D 
Sbjct: 640  GSYGAAGNNNIPPGQITQSFQNSTTTWINGFNNYWAASKIMANPDLKWETTVTRNIGLDF 699

Query: 706  GFLDNRLNVTADFFVKNTKDLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTR 765
               ++++  T D ++  TKDLL+   +   TG+DSQ +N+G+ QNKG+E S+N   I+ +
Sbjct: 700  ALFNSKVTGTIDAYLNKTKDLLILFPVGG-TGYDSQYRNLGQTQNKGLEFSVNWNAIKEK 758

Query: 766  DFSWQTNFNISFIKNTLKGLASGVESMYARSGFDSNFTAYDYIATVGQSLGLIYGYEFDG 825
            +F    N NISF +N +  L S V+++   SG+ S     DY+   G S+G IYGY+  G
Sbjct: 759  NFDLSVNANISFNRNKVISLGS-VKNINGTSGWASTEIGVDYLVEEGASIGRIYGYKSAG 817

Query: 826  VYQSSDF--YTTPDNQLILKEGVTNNARY-GTVKPGVVKYKDQDGDGIITTNDRTVIGNA 882
             Y+ SDF  Y     +  LK G+ +   + GTV+PG +K +D  GDG I  +DR++IGN 
Sbjct: 818  RYEVSDFTGYNATTGKWTLKPGIVDATSFVGTVRPGTMKIEDISGDGKIDLSDRSIIGNT 877

Query: 883  MPKWFGGITNTFDYKGIDFSFMLQFNYGNDIYNATRL-YSTQSRNGRRNMLA--EVADRW 939
             P   GG +        D      ++YGND+YNA ++ Y++ S+   RN+++  E   RW
Sbjct: 878  NPLNTGGFSLNSRIYDFDLGAYFNWSYGNDVYNANKIEYTSTSKYASRNLISAMESGQRW 937

Query: 940  S------------------PTNTSNLVPSQDGYIVNDVYSRFIEDGSFLRLKNVTLGYTL 981
            +                    NT+   P    ++++D     +EDGSFLRL  +TLGYTL
Sbjct: 938  TNLRADGTISNDPAELTAMNANTTLWSPYTKTFVLSD---WAVEDGSFLRLSTLTLGYTL 994

Query: 982  PHKWTRKFHVSRLRLYATGQNLFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTF 1041
            P + + K  + +LR YA+  NL+  + YSG+DPEV++  NTP+TPG+D+ AYP+S+ F F
Sbjct: 995  PAQISNKLKMKKLRFYASAYNLWLWTNYSGFDPEVSTRRNTPLTPGVDYSAYPRSKSFVF 1054

Query: 1042 GIDLQF 1047
            G+++ F
Sbjct: 1055 GLNVNF 1060