Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1021 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  553 bits (1425), Expect = e-161
 Identities = 357/1066 (33%), Positives = 539/1066 (50%), Gaps = 94/1066 (8%)

Query: 19   LALIMSISLHAQN------ATVKGVIVDE-TDTPLIGATVQVKGTATGSITDFDGNYTIK 71
            L L +S+++ AQ       + + G ++DE T  PLIG +VQ+KGT   + T+  G ++  
Sbjct: 9    LNLGLSVTVKAQQTIPLVQSKLVGTVLDEKTKDPLIGVSVQIKGTTHVAQTNAQGIFSFI 68

Query: 72   ANKGAVITF--SYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSDLTGSV 129
              +    T   SYIGY+ QE+   G SP+N+ +  +N  L+E+VVVGYGT KR DLTG++
Sbjct: 69   TGQKFPYTLVVSYIGYQKQELIVDG-SPVNILLKEENGQLNEIVVVGYGTQKRKDLTGAI 127

Query: 130  ASIAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIV 189
            AS+   +++    SS    L G ++G+Q+T T G PG G S+ IRG  ++T  S PLY++
Sbjct: 128  ASVKLDELKSLPVSSPERLLQGTVSGIQVTQTSGQPGGGVSVQIRGSNSITAGSDPLYVI 187

Query: 190  DGFEVDD-----------------IDYLSNSDIESIEVLKDASSSAIYGARAANGVVLIT 232
            DGF +++                 + +LS  DIESI+VLKDAS++AIYG+R ANGVV+IT
Sbjct: 188  DGFPINNDNTAADAGVTNGAKINPMSFLSAEDIESIDVLKDASATAIYGSRGANGVVIIT 247

Query: 233  TKSGKTGRPTITYNGSASYRKISKKLDVLSPYEFVKLQGEVNSKYSDSYFKPGNDDNDIP 292
            TK+GK   P+I Y+G    + + + L +L+  ++  L+ +       +   P      + 
Sbjct: 248  TKTGKPSNPSINYDGYYGSQSVIRTLPLLNGAQWWALRKDAAKNSGKNLVIPSVSGYGL- 306

Query: 293  YRYQSLDDYMGVKGVNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSG 352
                   D  GV G +WQ   F     Q+H++SI+ G++ +++  S + + + G+ +N+ 
Sbjct: 307  -------DTTGV-GTDWQAAAFRDAPVQNHNISILSGSERTRFALSGNYFNQEGVLQNTN 358

Query: 353  FDKTTGKFRLDQKLSKSLSFNITVNYALTNRKGVGTSADSGRFNMLAQILSARPTGGLKL 412
            F +  G+  +D + +K L    +V        G  T+A+    N++  +L   P+  +  
Sbjct: 359  FTRYAGRLNIDHEYNKRLRIFASVI-------GSSTTANVAPANIVGNLLLTPPSLPIYK 411

Query: 413  TDDELLDSAIDPEMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKT 472
             D   +       ++   ES  Q NP+    +  N  +   + GN S  + I +GL  K 
Sbjct: 412  NDGTFV-------VISPFESALQ-NPINSLYNQINQTKTNRFLGNVSAEYTIAEGLKAKI 463

Query: 473  AGTYNTTNNRTNIFYKDGSKEAYRNGQKPYGRTQMGR--DVRWTNFNNLTW-KQKVKKHN 529
                + T+N+ N +    + E    GQ   G   +G      W N N L++ K   +KH 
Sbjct: 464  LFGADVTDNKQNRYLPITTGE----GQALSGVATVGSLFTSSWLNENTLSYDKTFAEKHK 519

Query: 530  YDVMLGHEVSFRSTEYLLGEAMDFPFDNLGNDYLGLGATPSKVESSYSEKMLLSFFARGN 589
             + ++G      +T+  + E   F  D+   + +G G T     S+  +  L S+  R N
Sbjct: 520  INAVVGFTAQKSNTKGAVAEGAGFATDDYTYNNIGTGVTQRPASSTAIQWALASYLGRVN 579

Query: 590  YNYDNRYLLTATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGW 649
            Y +D RYL T T+RADGS+ F   NKWG+FPS +  W V+ E+F K+   +S  KVRL  
Sbjct: 580  YVFDGRYLATLTLRADGSSRFGEGNKWGYFPSAAFGWNVTSESFAKEWKKISQLKVRLSA 639

Query: 650  GIVGNDRISNYLSMDLYEASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINLGVDLGFLD 709
            G  GN  I  Y S+      +Y   N TV    P  + N NL WE +  ++ G DLG  D
Sbjct: 640  GYTGNQNIPPYSSLGQIGYYRYNFSNTTVAGFAPNNVGNPNLGWEKTLQVDAGFDLGLFD 699

Query: 710  NRLNVTADFFVKNTKDLLLAQSLAHVTGFDSQ--------MQNIGKIQNKGIELSLNSTN 761
            NR+ +TAD++ K T DLLL++S+   +G             QNIG++ NKGIELSL + N
Sbjct: 700  NRIAITADYYYKKTTDLLLSRSVPGTSGLSDPYNAQASVVYQNIGEVANKGIELSLTTRN 759

Query: 762  IQTRDFSWQTNFNISFIKNTLKGLASGVESMYARSGFDSNFTAYDYIATVGQSLGLIYGY 821
                +F W T    S  +N +  L  GV      +   S       IA VG  LG    Y
Sbjct: 760  F-INEFKWSTTALFSVNRNKVLSLGDGVNQYIPNNNAPS-------IAKVGYPLGSFIVY 811

Query: 822  EFDGVYQSSDFYTTPDNQLILKEGVTNNARYGTVKPGVVKYKDQDGDGIITTNDRTVIGN 881
            + DGV Q+ D   TP                     G  KYKD +GDG IT  D  ++  
Sbjct: 812  QTDGVIQAGDVPLTPQ---------------ANKSAGGQKYKDLNGDGKITQGDDRIVIA 856

Query: 882  AMPKWFGGITNTFDYKGIDFSFMLQFNYGNDIYNATRLYSTQSRNGRRNMLAEVADRWSP 941
              P +  G+TNTF YKG D +  LQ N G  +YN  R  + +   G  N   E+ +RW+P
Sbjct: 857  NQPGFLAGLTNTFSYKGFDVNVFLQANVGGKLYNQNRA-NLELATGYVNGSTELLNRWTP 915

Query: 942  TNTSNLVPS--QDGYIVNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYAT 999
             NT+  V +  QD  I   +  RFIE  S+LRLKNV+LGYTLP     K     +R+Y +
Sbjct: 916  GNTNTDVKAAFQDPAIT--ISDRFIESSSYLRLKNVSLGYTLPKHIAAKIKTQNIRIYVS 973

Query: 1000 GQNLFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDL 1045
            G NL   + Y+G+DPE +    + +  G+D G YP S+   FG+ L
Sbjct: 974  GANLVTWTKYTGFDPEASVNGQSLLAAGVDNGVYPNSKSVQFGLSL 1019