Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1001 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  514 bits (1324), Expect = e-149
 Identities = 347/1059 (32%), Positives = 529/1059 (49%), Gaps = 78/1059 (7%)

Query: 6    IIKSISARGLFTLLALIMSISLHAQNATVKGVIVDETD-TPLIGATVQVKGTATGSITDF 64
            I   IS    F LL + +++   AQN TVKG ++D  D TPL G T+ VKGT  G+ TD 
Sbjct: 4    IFTRISVLAAFCLLTINVAL---AQNITVKGKVIDGGDKTPLPGVTILVKGTQNGTQTDV 60

Query: 65   DGNYTIKANKGAVITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSD 124
            +GNY+I     A + F+++GY   E     Q+ LNV +    Q L++VVVVGYGT ++ D
Sbjct: 61   NGNYSISVPGDATLVFNFVGYTALEQAVNNQTTLNVSLASSTQQLEQVVVVGYGTQRKID 120

Query: 125  LTGSVASIAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSS 184
            +TG+VAS+  +D+    + +  GAL G++AGV IT+T GTPG   +I IRG GT+ G S 
Sbjct: 121  VTGAVASVKGEDISKQASVNPVGALQGKVAGVSITNT-GTPGGSPTITIRGTGTIYGKSV 179

Query: 185  PLYIVDGFEVDDIDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTIT 244
            PLY+VDG   DDI++L+ +DI +I +LKDAS+ +IYG RAANGVVL+TT  GK G   I 
Sbjct: 180  PLYVVDGVWYDDINFLNPADIANISILKDASAQSIYGIRAANGVVLVTTNKGKKGDAVIN 239

Query: 245  YNGSASYRKISKKLDVLSPYEFVKLQGEVNSKYSDSYFKPGNDDNDIPYRYQSLDDYMGV 304
            YNG+  ++K++ ++++ +  E+      VN  Y+    +P   + ++             
Sbjct: 240  YNGTVGFQKVTNQVEMANASEYA---AAVNEAYALQGAQPLFANTNLG------------ 284

Query: 305  KGVNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQ 364
            +G NW D         +H LSI GG++ S YN S     ++GI KN+ + + T +   D 
Sbjct: 285  EGTNWYDVVLREALVTNHQLSISGGSEKSTYNLSLGYLNQDGIVKNNNYKRYTARLSNDF 344

Query: 365  KLSKSLSFNITVNYALTNRKGVGTSADSGRFNMLAQILSARPTGGLKLTDDELLDSAIDP 424
            ++ + L     + Y +T        A S  F  L    +A P   +   D     S  DP
Sbjct: 345  QIFQPLK----IGYNVTATSSKSKDAPSTIFRAL---YAASPVVPVFNAD----GSYGDP 393

Query: 425  EMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTA--GTYNTTNNR 482
                 G   + +NP    +           +GN     + +K  TFKT+  G +     R
Sbjct: 394  NAFNLGNG-SNMNPQATLDFFNQQTTKYKVTGNVYAELKFLKDFTFKTSFGGDFGQEEVR 452

Query: 483  TNI-FYKDGSKEAYRNGQKPYGRTQMGRDVRWTNFNNLTWKQKVKKHNYDVMLGHEVSFR 541
              I  YK  + +   N +    R +   +  W   N LT+ +K   H+  V++G      
Sbjct: 453  GYIPVYKASNTQQNTNSRLDIDRIE---NRNWIIENTLTYDKKWTDHSLTVLVGQTAQRN 509

Query: 542  STEYLLGEAMDFPFDNLGNDYLGLGATPSK-VESSYSEKMLLSFFARGNYNYDNRYLLTA 600
                +  +A++ P+ + G+ YL LG   S+ +  S       S+FAR NY+Y NRYLL A
Sbjct: 510  KMYTINADALNVPYTSEGDLYLALGNAASRNITDSGELSTFASYFARVNYSYKNRYLLNA 569

Query: 601  TVRADG-STVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGWGIVGNDRISN 659
            ++R DG S  F + N WG FPS  A W +S E FMKD    SN K+R  WG VGN  +  
Sbjct: 570  SIRRDGASQFFGSDNLWGNFPSIGAGWVISNEEFMKDQKIFSNLKLRGSWGKVGNAGVPF 629

Query: 660  YLSMDLYEASKYGV---GNNTVTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRLNVTA 716
              S    + S   V   G    T  + + +    L WE S+  ++G+++GFL+NRL V A
Sbjct: 630  NPSTQTVDQSAGLVAIFGGLPYTGASIRSIVPPFLLWERSAGTDVGLEMGFLNNRLTVEA 689

Query: 717  DFFVKNTK----DLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTRDFSWQTN 772
            D++ + T+    D+ +  +L   T   + + N   IQN+G E S    +     FS+  +
Sbjct: 690  DYYSRKTEQAIFDIPVFGNLG--TANSTLIANQADIQNRGFEFSATWADKTEGGFSYSVS 747

Query: 773  FNISFIKNTLKGLASGVESMY-ARSGFDSNFTAYDYIATVGQSLGLIYGYEFDGVYQSSD 831
             N+    N +  + SG   +Y   +G  S + +   +    + +G  +GY+ +GV+Q+  
Sbjct: 748  GNVGINNNKVLNVTSGSNPIYRGGAGITSGYLSTRTVN--NRPIGEFFGYQVEGVFQTD- 804

Query: 832  FYTTPDNQLILKEGVTNNARYGTVKPGVVKYKDQDGDGIITTNDRTVIGNAMPKWFGGIT 891
                              A +   K G  KY D +GDGII   DR V+GN  PK+  G+ 
Sbjct: 805  ---------------AEAAAWPGFKRGDFKYADINGDGIIDLRDRVVLGNPNPKFTYGVN 849

Query: 892  NTFDYKGIDFSFMLQFNYGNDIYNATRLYSTQSRNGRRNMLAE-VADRWSPTNTSNLVPS 950
              F YK  D +  +Q     D++NA    +  +R G  N   + +++RW+   TSN   S
Sbjct: 850  TNFAYKNFDLTLDIQGVADVDVFNA----NLSNRFGNENYTKDFISNRWTSAGTSNTYAS 905

Query: 951  QD--GYIVNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATGQNLFCVSG 1008
                  + N   S ++E G ++RL+N+ LGYTLP   + K  + RLRL+   QN   + G
Sbjct: 906  ASLASGLNNAPNSFYVEKGDYIRLRNIQLGYTLPQVISNKMKMQRLRLFVNAQNAVNIFG 965

Query: 1009 YSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDLQF 1047
            Y G+ PEV  A   P   G+D   YP    + FG+++ F
Sbjct: 966  YKGFSPEVGGA---PTNAGIDTNVYPLFATYNFGVNVTF 1001