Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1028 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  726 bits (1874), Expect = 0.0
 Identities = 412/1044 (39%), Positives = 602/1044 (57%), Gaps = 36/1044 (3%)

Query: 22   IMSISLHAQNATVKGVIVDETDTPLIGATVQVKGTATGSITDFDGNYTIKANKGAVITFS 81
            I+   + AQ+ T+ GV+ D     + G T+QVKG+   + TD +G Y I+A     + F+
Sbjct: 3    IVGTQVFAQSRTIIGVVTDGQKQTIPGVTIQVKGSKIITQTDEEGRYRIQALPADQLVFN 62

Query: 82   YIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSDLTGSVASIAAKDVEGFK 141
            Y+GY+ + +    ++ +N+ + P +  L +VVV+GYG+  R+DL+ S+AS+   D E   
Sbjct: 63   YVGYQAETVSVGAKTTINITLKPSSIGLSDVVVIGYGSANRNDLSTSIASVKMSDFEKAP 122

Query: 142  TSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDGFEVDDI--DY 199
              S   AL G++AGVQ+  +DG PGA  +I IRG G++T D+SPLY++DGF +D+   + 
Sbjct: 123  VKSFEEALAGRVAGVQVAGSDGQPGAVSNIVIRGAGSITQDNSPLYVIDGFPMDNANNNS 182

Query: 200  LSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGSASYRKISKKLD 259
            ++  DIESI+VLKDA+++AIYG+R ANGV+ I TK GKTG+P + YNG    ++ +K++ 
Sbjct: 183  INPDDIESIDVLKDAAATAIYGSRGANGVIQIVTKRGKTGKPVVAYNGYYGLQENTKRIA 242

Query: 260  VLSPYEFVKLQGEVNS-KYSDSYFKPGNDDNDIPYRYQSLDDYMGVKGVNWQDETFNPTW 318
            V+ PY FVKL  E++    +  YF  G          ++L+ Y G++G ++QD+ F    
Sbjct: 243  VMDPYNFVKLANELDPVGTAQGYFIEG----------RTLESYQGLQGTDYQDQLFKIAP 292

Query: 319  SQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKLSKSLSFNITVNY 378
             Q+HSLS+ GG D +KY+ S +   + GI  NSGF +   +F LD  +SK +   I VNY
Sbjct: 293  YQNHSLSLRGGADQTKYSLSTNYQDQEGIIINSGFSRIQSRFTLDHNVSKKVKAGINVNY 352

Query: 379  ALTNRKG--VGTSADSGRFNMLAQILSARP-TGGLKLTDDELLDSAIDPEMLESGESLAQ 435
            + T   G  +G+S  S   N L  I   RP TG L   DD+L D  +    + S     +
Sbjct: 353  SYTQSYGGPIGSSNFSASINTLYSIWGYRPITGSLLPIDDQLYDPGLPAVNVYSD---YR 409

Query: 436  VNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTAGTYNTTNNRTNIFYKDGSKEAY 495
             NP+   ++  N  ++     N  + ++IIKGL  K+ G  +  N R N FY  GS  A 
Sbjct: 410  ANPILDLKNRINNNKSNNLDANAYVEYEIIKGLKLKSTGGISIANARVNAFY--GSNTAL 467

Query: 496  ---RNGQKPYGRTQMGRDVRWTNFNNLTWKQKVKK-HNYDVMLGHEVSFRSTEYLLGEAM 551
                  QK  G         W N N LT+ +K+   HN + ++G    F  T      A 
Sbjct: 468  GGPYTAQKVNGSIYNNTGSTWLNENTLTYAKKINNAHNLNAVIGFSNQFAKTGSAGFSAT 527

Query: 552  DFPFDNLGNDYLGLGATPSKVESSYSEKMLLSFFARGNYNYDNRYLLTATVRADGSTVFS 611
            + P ++LG D L L +T     S  S   + SFF R +Y+Y + YL TA+ RADGS+ F+
Sbjct: 528  NVPNESLGLDALDL-STSIVARSVNSTWGMQSFFTRVSYDYKSTYLFTASYRADGSSRFA 586

Query: 612  NKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGWGIVGNDRISN--YLSMDLYEAS 669
               KWG+FP+ SAAW++  E+F+KD   +S+ K+R  +G  GN+R+S+  YLS   +  +
Sbjct: 587  PGEKWGYFPAVSAAWKIKNESFLKDAKILSDAKIRTSYGETGNNRVSDFAYLSQLAFPLN 646

Query: 670  KYGVGNNTVTVLTPK--QLKNANLKWEGSSTINLGVDLGFLDNRLNVTADFFVKNTKDLL 727
            +    NN    L+       N  LKWE S   N+G+DLGFL  R+ +TAD + K T DLL
Sbjct: 647  QSYSFNNNPPELSAMIGTFGNEGLKWETSRQTNIGIDLGFLKQRMLLTADIYRKKTSDLL 706

Query: 728  LAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTRDFSWQTNFNISFIKNTLKGLAS 787
            L   L + TG  +  +N+G +QN G+EL+LN+ NIQ ++F W TNFNISF KN +  LA 
Sbjct: 707  LNAQLPYTTGASNAFKNVGAMQNDGLELTLNTVNIQNKNFRWTTNFNISFNKNKVVSLAE 766

Query: 788  GVESMYARSGFDSNFTAY-DYIATVGQSLGLIYGYEFDGVYQSSDFYTTPDNQLILKEGV 846
              + +    GFD+ ++    YI+ +GQS+G +YG+ FDG+YQ SDF   P+    LK  +
Sbjct: 767  NQQYLATTVGFDTRYSNIPPYISVLGQSVGQLYGHIFDGIYQYSDFDKMPNGAYALKSNI 826

Query: 847  -TNNARYGTVKPGVVKYKDQDGDGIITTNDRTVIGNAMPKWFGGITNTFDYKGIDFSFML 905
             TN+     +KPG +K+KD +GDG++   DRT+IG  +P   GG +N F YK  D +   
Sbjct: 827  PTNSNARANIKPGDIKFKDINGDGVVNEQDRTIIGRGLPLHVGGFSNNFTYKNFDLNVFF 886

Query: 906  QFNYGNDIYNATRLY--STQSRNGRRNMLAEVADRWSPTNTSNLVPSQDGYIVNDVYSRF 963
            Q++YGN++ NA RL    + S N   N  A   DRWSPTN SN      G I N   S  
Sbjct: 887  QWSYGNNLINANRLMFEGSTSNNPFLNQFATYIDRWSPTNPSNTYYRAGGGI-NTYSSNV 945

Query: 964  IEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATGQNLFCVSGYSGYDPEVNSASNTP 1023
            +EDGS+LRLK V+LGY    K   K  +S LR+YA+ QNLF ++ YSG DPEV S  N+ 
Sbjct: 946  VEDGSYLRLKTVSLGYNFSKKLLDKIKLSSLRVYASAQNLFTMTNYSGPDPEV-STRNSV 1004

Query: 1024 MTPGLDWGAYPKSRVFTFGIDLQF 1047
            +TPG D+ AYP+ R   FG++  F
Sbjct: 1005 LTPGFDFSAYPRPRTIVFGLNTSF 1028