Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1049 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  711 bits (1835), Expect = 0.0
 Identities = 416/1065 (39%), Positives = 603/1065 (56%), Gaps = 51/1065 (4%)

Query: 15   LFTLLALIMSIS-LHAQNA-TVKGVIVDETDTPLIGATVQVKGTATGSITDFDGNYTIKA 72
            +  L  L+ S + L AQ   TVKG++ DET+ PL GATV  KGT   +IT  DG YTIK 
Sbjct: 4    IIILFLLLTSYNFLFAQEVITVKGIVKDETNQPLPGATVNEKGTTNTTITGNDGGYTIKV 63

Query: 73   NKGAVITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYG-TMKRSDLTGSVAS 131
               A + FSY+G KT E    G++ +N K+I D   L+EVVV GYG T+ R DLTG+++S
Sbjct: 64   KSNARLVFSYLGTKTSEQGVNGRTTINAKLIDDANNLNEVVVTGYGQTVARKDLTGAISS 123

Query: 132  IAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDG 191
            I  +++      +V  AL G++AGVQ++  DGTPGA  SI IRG  ++T  + PLY+VDG
Sbjct: 124  IKGEELAKVPVQNVGQALQGRLAGVQVSMADGTPGAAPSIVIRGGTSITQSNEPLYVVDG 183

Query: 192  F-EVDDIDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGSAS 250
              + D + +L   DIES++VLKD S+++IYGAR ANGVVL+TTK  K G+ +I Y+G   
Sbjct: 184  VPQTDGLSFLDPMDIESVDVLKDVSATSIYGARGANGVVLVTTKKIKEGKVSINYDGYVG 243

Query: 251  YRKISKKLDVLSPYEFVKLQGEVNSKYSD---SYFKPGNDDNDIPYRYQSLDDYMGVKGV 307
             +K++  L +++P ++  L+ EV++       S+ K     + +  RY +        GV
Sbjct: 244  VKKVTTFLPMMNPLQYTLLRYEVSATDPARLASFLKNYGSFDSLQIRYGNRP------GV 297

Query: 308  NWQDETF-NPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKL 366
            +WQ E+F +   +Q H +SI GG  ++++N  +SR  +NGI  N+   K   K  L   +
Sbjct: 298  DWQKESFGDAVVNQAHKISINGGGRETRFNVFYSRNDDNGILLNTASAKDIAKVSLSHNV 357

Query: 367  SKSLSFNITVNYALTNRKGVGTSADSGRFNMLAQILSARPTGGLKLTDDELLDSAIDPEM 426
            S+  + +  VNYA  N+K  G     GR ++L  IL  RP  G+   D  L+D  IDP +
Sbjct: 358  SQKFNLSAIVNYA--NQKITGLGTGEGRLSLLNTILRYRPVVGIGNDDFSLIDLDIDP-L 414

Query: 427  LESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTAGTYNTTNNRTNIF 486
              +  S+   +P+   E+     R +  + N + S+   K  T++    +   NN   IF
Sbjct: 415  DPNPSSVLYQSPIVTLETQHRESRLKSLNMNATASYFFDKHFTYRGLVNFTDNNNSARIF 474

Query: 487  YKDGSKEAYRNGQKPYGRTQMGRDVRWTNFNNLTWKQKV--KKHNYDVMLGHEVSFRSTE 544
                S  A R+G    G        +  N+NN      V  K H  DV +G E  +   +
Sbjct: 475  NDARSLFAQRSGGATGGVGYS--TAQQFNYNNTLTYANVFNKDHKLDVSVGQEYIYNYNQ 532

Query: 545  YLLGEAMDFPFDNLGNDYLGLGATPSKVESSYSEKMLLSFFARGNYNYDNRYLLTATVRA 604
             LL  + +FP  NLG D L LG   S   ++  +  LLSFF+R NY+Y  +YLLTAT+RA
Sbjct: 533  SLLTASTNFPSINLGWDKLQLGTVTSFPVTAAEDSKLLSFFSRANYSYKGKYLLTATLRA 592

Query: 605  DGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGWGIVGNDRISNYLSMD 664
            DGS+ F   N WG+FPS + +WR  EE FMK     S+ K+RL +G+ GN+RI+NY ++ 
Sbjct: 593  DGSSKFGANNTWGYFPSAAVSWRAIEEKFMKQQHIFSDLKLRLSYGVAGNNRIANYAALG 652

Query: 665  LYEASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRLNVTADFFVKNTK 724
            +Y A  Y + +  ++    + L N +LKWE    +N+G+D+G L  R+ +T +++   +K
Sbjct: 653  IYNAGVYPLNDQLISASFQENLANPSLKWESLKALNIGLDIGLLKQRITLTTEYYDNRSK 712

Query: 725  DLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTRDFSWQTNFNISFIKNTLKG 784
            DLL    +   +GF++Q QNIG   ++G+E++LNSTNI+T +F+W TN N++F    +  
Sbjct: 713  DLLFNTRIPASSGFNTQFQNIGTTSSRGLEMTLNSTNIRTTNFNWTTNLNVAFTNTKVLS 772

Query: 785  LASGVESMYARSGFDSNFTAYDYIATVGQSLGLIYGYEFDGVYQSSDF-YTTPDNQLILK 843
            L+ G  S  A    D N  A DYI  VG  +G++YGY  +G+YQ SDF Y    N   LK
Sbjct: 773  LSDGETSRLA----DGNI-ASDYILQVGSPVGVMYGYVKEGLYQVSDFNYNPTTNAYTLK 827

Query: 844  EGVTNNARYGTVKPGVVKYKDQDG-----DGIITTNDRTVIGNAMPKWFGGITNTFDYKG 898
             GV  +A   TV+PG +K+KD  G     DGII   DR  +GNA PK+ GG+ N F YKG
Sbjct: 828  PGVVRDA--VTVQPGFIKFKDISGPDGVPDGIINNFDRVPLGNAKPKFSGGLGNNFSYKG 885

Query: 899  IDFSFMLQFNYGNDIYNATRLYSTQSRNGRRNMLAEVADRWSPTNTS------------- 945
             D S  + F+ GN +YNA RL ++       N  A  ADRW+  NTS             
Sbjct: 886  FDLSVFVNFSLGNKVYNANRLTNSDLTLDYVNTFASFADRWTTINTSGARVTSPVELAAL 945

Query: 946  ---NLVPSQDGYIVNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATGQN 1002
                 +PS +G   + +Y   IEDGSFLR+ NV+LGYT P KW     ++  R+Y T  N
Sbjct: 946  NQGKTIPSYNGGGSSRLYDEIIEDGSFLRINNVSLGYTFPKKWLSAVKIANARVYFTAYN 1005

Query: 1003 LFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDLQF 1047
            L+  + Y GYDPEV S  N P+TPG+D  AYP+++ F  G++L F
Sbjct: 1006 LYVFTKYKGYDPEV-SVVNNPLTPGIDASAYPRAKSFLAGLNLSF 1049