Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1049 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  645 bits (1663), Expect = 0.0
 Identities = 370/1059 (34%), Positives = 589/1059 (55%), Gaps = 46/1059 (4%)

Query: 18   LLALIMSISLHAQNATVKGVIVDE-TDTPLIGATVQVKGTATGSITDFDGNYTIKAN--K 74
            L+ +I ++   +Q   V+G + ++ +   L+G +V VKGT TG+ TD DG+Y I+ +  +
Sbjct: 8    LMCMIYALGAFSQTRKVEGTVTEQGSGIALVGVSVSVKGTKTGASTDKDGHYAIQVSTKE 67

Query: 75   GAVITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSDLTGSVASIAA 134
             + + FSY+GY  +E+    +  +N+ +  D + L +VVVVGYGT K+ DL  SV  +  
Sbjct: 68   KSTLVFSYVGYLQREMPVGDKGVINLSLASDEKALGDVVVVGYGTSKKGDLVSSVGQVDM 127

Query: 135  KDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDGFEV 194
             D+      S+  +L G++AGVQ+ S+DG PG+  +I IRG  ++T ++SPLY+VDGF +
Sbjct: 128  NDMAKAPVRSIDESLAGRVAGVQVNSSDGQPGSSVNIVIRGANSITQNNSPLYVVDGFPI 187

Query: 195  D--DIDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGSASYR 252
            +  +++     ++ESI+VLKDAS++AIYGAR ANGV++ITTK GK G P I+++ + S+ 
Sbjct: 188  EGFNLNVFDPQEVESIDVLKDASATAIYGARGANGVIMITTKKGKMGAPVISFSPTVSFD 247

Query: 253  KISKKLDVLSPYEFVKLQGEVNSKYSDSYFKPGNDDNDIPYRY------QSLDDYMGVKG 306
               K +++++ Y+F K+Q E+          PG+ ++  P         ++L+DY     
Sbjct: 248  NNIKTMELMNSYDFAKMQLELVPG------APGSANDPTPIYILLTRPGKTLEDYRNAPA 301

Query: 307  VNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKL 366
             +WQ   F     QD+SL++ GGTD + Y  S +   + G   N+ + +  G+  LDQ L
Sbjct: 302  TDWQSPFFQTGLRQDYSLALRGGTDKTIYALSGNLNDQKGTIINTAYKRYQGRITLDQTL 361

Query: 367  SKSLSFNITVNYALTNRKGVGTS---ADSGRFNMLAQILSARPTGGLKLTDDELLDSAID 423
            SK +   +  NYA   R G   +     SG  N+L  +    P    +LT+DE +D    
Sbjct: 362  SKKIKVGVNANYAYLLRSGNSAAQGTGGSGTTNILYSVWGYSPLS--ELTEDEAID---- 415

Query: 424  PEMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTAGTYNTTNNRT 483
             E   SG    + NP+    ++    +    + +G   + I   L  K  G  N T   +
Sbjct: 416  -ETTASGVDY-KFNPIMNQNNLLRNNKTHNLNVSGYFDYAITDNLKLKITGGINNTRVIS 473

Query: 484  NIFYKDGSKEAYRNGQKPYGRTQ-------MGRDVRWTNFNNLTW-KQKVKKHNYDVMLG 535
              F  + SK    +     GRT              W+N N LTW K   K HN +++ G
Sbjct: 474  EEF--NNSKTYPGSPNTTPGRTSGVNGSIAEANTNNWSNENTLTWTKTYNKSHNLNILGG 531

Query: 536  HEVSFRSTEYLLGEAMDFPFDNLGNDYLGLGATPSKVESSYSEKMLLSFFARGNYNYDNR 595
                  ++      A   P + LG   L  G       ++ S   L SFF R  YN+ ++
Sbjct: 532  FSTQGNTSNAFGFGATFLPNEKLGLSGLNEGILNPVTIATSSLWTLSSFFGRIKYNFKSK 591

Query: 596  YLLTATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGWGIVGND 655
            Y L A+ RADGS+ F++ NKW +FPS   +WR  +E F+K+   +S  K+R  +G  GN+
Sbjct: 592  YYLEASYRADGSSKFADGNKWSYFPSIGGSWRFIKEDFLKNSKVLSEGKLRASFGKTGNN 651

Query: 656  RISNYL---SMDLYEASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRL 712
            R++++    S D+   + Y   N+ V+ + P  L N  +KWE +   + GVDLGFL NR+
Sbjct: 652  RVNDFAYLSSNDVVPGNSYPWNNSYVSSIIPTSLGNPKVKWETTDQYDAGVDLGFLKNRI 711

Query: 713  NVTADFFVKNTKDLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTRDFSWQTN 772
            ++TAD + KNTKDLLL  +L   +G+ S  +N+G + N+G+E+SL++ NI  ++F W ++
Sbjct: 712  SLTADVYKKNTKDLLLRATLPTSSGYTSAFKNVGAVANRGLEISLSTINISNKNFQWNSS 771

Query: 773  FNISFIKNTLKGLASGVESMYARSGFDSNFTAY-DYIATVGQSLGLIYGYEFDGVYQSSD 831
            FNISF +N +  LA   +++ + + +D+ +T    YIA +G+ LGL+YG+ +DGVYQ SD
Sbjct: 772  FNISFNRNKVLALAEDQQTLLSTTNWDNAYTNIPSYIAKIGEPLGLMYGFIWDGVYQYSD 831

Query: 832  FYTTPDNQLILKEGV-TNNARYGTVKPGVVKYKDQDGDGIITTNDRTVIGNAMPKWFGGI 890
            F  T   + +LK+ V  N +    ++PG ++Y+D +GDG +  +D  VIGN++P   GG 
Sbjct: 832  FNRTSTGEYLLKDNVPANGSARQNIQPGDIRYRDLNGDGNVNASDYAVIGNSLPLHTGGF 891

Query: 891  TNTFDYKGIDFSFMLQFNYGNDIYNATRLYSTQSRNGRR--NMLAEVADRWSPTNTSNLV 948
            +N F YK  D +   Q++YGNDI N  R     +  G+R     +   DRWSP N ++  
Sbjct: 892  SNNFTYKQFDLNVFFQWSYGNDIQNINRQVFEGNALGKRFLQQYSSYTDRWSPENQASSN 951

Query: 949  PSQDGYIVNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATGQNLFCVSG 1008
                G+ V    SR IEDGSFLRLK V+LGY +P     +  +   R++ +GQNL+  + 
Sbjct: 952  YRTGGFSVAGYSSRTIEDGSFLRLKTVSLGYNIPKPLLDRVKIKTARIFVSGQNLYTWTK 1011

Query: 1009 YSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDLQF 1047
            Y+G DPEV++ S+  +T G D+ AYP++R   FG ++ F
Sbjct: 1012 YTGLDPEVSTYSSV-LTGGFDYSAYPRARTIAFGANVTF 1049