Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1037 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  551 bits (1420), Expect = e-161
 Identities = 353/1065 (33%), Positives = 540/1065 (50%), Gaps = 90/1065 (8%)

Query: 8    KSISARGLFTLLALIMSISLHAQ-----NATVKGVIVD-ETDTPLIGATVQVKGTATGSI 61
            K I+   L   L L++S + HAQ     N+T+ G + D  T   L G  V + GT   ++
Sbjct: 34   KKITFSFLILFLLLVLSKNGHAQTTPLINSTLTGTVRDARTGETLPGVNVGINGTTHTAL 93

Query: 62   TDFDGNYTIKANKGA--VITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGT 119
            TD +G +     +     +T S++GYKT ++   G SPL VK+     TL+ VVVVGYGT
Sbjct: 94   TDNNGIFRFVTGQKFPYTLTISFVGYKTLQVVANG-SPLEVKLEEQVNTLNNVVVVGYGT 152

Query: 120  MKRSDLTGSVASIAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTL 179
             K+SD TGS++S+   +++G   +S    + G I+G Q+T + G PG G SI +RG  ++
Sbjct: 153  QKKSDFTGSLSSVPT-ELKGVPVASPDRLIQGAISGAQVTQSSGQPGGGVSIRVRGGTSI 211

Query: 180  TGDSSPLYIVDGFEV-----------------DDIDYLSNSDIESIEVLKDASSSAIYGA 222
               + PLY++DGF V                 + +  ++ +DIESI+VLKDAS++AIYG+
Sbjct: 212  NAGNEPLYVIDGFPVYNGDASVDAGITNGPAINPLSAINPADIESIDVLKDASATAIYGS 271

Query: 223  RAANGVVLITTKSGKTGRPTITYNGSASYRKISKKLDVLSPYEFVKLQGEVNSKYSDSYF 282
            R ANGV+LITTK G     +I Y+G    +K+SK + VL+  E+  L+ +  +       
Sbjct: 272  RGANGVILITTKRGSKNSFSINYSGYYGTQKVSKNIGVLNAREWGALKNDALT------- 324

Query: 283  KPGNDDNDIPYRYQSLDDYMGVKGVNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRY 342
                D    P+  Q+  D +G +G +WQ E F     Q+HSLSI  G + ++   S + +
Sbjct: 325  ----DAGKAPFYTQAQLDQLG-EGTDWQSEAFRTAPVQNHSLSISSGNEKTRLLLSGNYF 379

Query: 343  IENGIFKNSGFDKTTGKFRLDQKLSKSLSFNITVNYALTNRKGVGTSADSGRFNMLAQIL 402
             + G+  N+GFD+ + K  +D +++        +N ++T+       AD     ++A IL
Sbjct: 380  KQEGVILNTGFDRYSAKLNIDHEVNAKFKLGAYLNGSITH-------ADVAPSGIVANIL 432

Query: 403  SARPTGGLKLTDDELLDSAIDPEMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISW 462
            S  P   +K  +     ++        G ++A  NP+      TN  +   +  N    +
Sbjct: 433  SMVPVVPVKDANGNFTANS------SFGATVA--NPIATLSLQTNETKTTRFLANSFGEY 484

Query: 463  QIIKGLTFKTAGTYNTTNNRTNIFYKDGSKEAYRNGQKPYGRTQMGRDVRWTNFNNLTWK 522
             II GLT + +   +  NN+ N +      E+   G    G       + W N N + +K
Sbjct: 485  TIIDGLTARVSLGADIINNKQNRYLPSALYESLPGGNASIGALST---LNWLNENTINYK 541

Query: 523  QKVK-KHNYDVMLGHEVSFRSTEYLLGEAMDFPFDNLGNDYLGLGATPSKVESSYSEKML 581
            + V  KH++D++LG+      TE       +F  D    + L  G   +   S  +E  L
Sbjct: 542  KTVNGKHSFDILLGNTQQKSVTEVFTAGTSNFVSDAFKYNNLASGTVLATPTSLKTEWAL 601

Query: 582  LSFFARGNYNYDNRYLLTATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVS 641
             SF AR NY YDN+YLLT T RADGS+ F   NKWG FPS + AW  S E F++ +  +S
Sbjct: 602  QSFLARINYAYDNKYLLTLTARADGSSRFGINNKWGTFPSAAIAWNASNEGFLQGIKAIS 661

Query: 642  NFKVRLGWGIVGNDRISNYLSMDLYEASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINL 701
            + K R   G+ GN  I  Y S+    + +Y   N  V  L      N +L WE ++  N 
Sbjct: 662  SLKFRFSAGVTGNQEIDPYRSLSRLSSYQYTFANTLVNGLAIASFANPDLTWEKTAQYNF 721

Query: 702  GVDLGFLDNRLNVTADFFVKNTKDLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTN 761
            G+DL     R+ +T D + K T DLLL   + + +   S  QN+G ++NKG+EL L + N
Sbjct: 722  GIDLELFSGRIQLTTDVYYKRTSDLLLEVPVPYSSSLTSAFQNLGVVRNKGVELGLKTIN 781

Query: 762  IQTRDFSWQTNFNISFIKNTLKGLASGVESMYARSGFDSNFTAYDYIATVGQSLGLIYGY 821
             Q  DF+W T  N+ F  N  K +  G    +  +   S  T    I  VG+S+G  Y Y
Sbjct: 782  FQ-GDFNWTT--NLIFSANRNKIITLGGAPYFFVTDPASPTTLPTQIIKVGESVGAFYMY 838

Query: 822  EFDGVYQSSDFYTTPDNQLILKEGVTNNARYGTVKPGVVKYKDQDGDGIITTN-DRTVIG 880
            E DGV  ++                           G+ KYKD +GDG IT + DR ++G
Sbjct: 839  ETDGVNPAT---------------------------GLQKYKDLNGDGAITQDADRKIVG 871

Query: 881  NAMPKWFGGITNTFDYKGIDFSFMLQFNYGNDIYNATRLYSTQSRNGRRNMLAEVADRWS 940
            ++ PK+   ITNTF  K  D S     +YGN I+N TR  + +   G    +A + DRW+
Sbjct: 872  SSQPKFLASITNTFRCKNFDLSVFFNASYGNKIFNWTRA-NLELGTGYTGAVATLLDRWT 930

Query: 941  PTNTSNLVPSQDGYIVNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATG 1000
            PTN +  V          +  RF+EDG+F+RLKNV++GY++P +   K  +S LR+Y +G
Sbjct: 931  PTNRNTDVHKAIENPAVTISDRFVEDGAFIRLKNVSIGYSIPGRLLSKLKLSALRVYVSG 990

Query: 1001 QNLFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDL 1045
             NL+  + Y+GYDPEV++     ++ G+D  AYP ++    GI L
Sbjct: 991  SNLYTWTKYTGYDPEVSTNGQNSISTGMDRAAYPNAKSIQGGISL 1035