Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1043 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  535 bits (1377), Expect = e-156
 Identities = 342/1050 (32%), Positives = 556/1050 (52%), Gaps = 58/1050 (5%)

Query: 27   LHAQNATV-KGVIVDETDTPLIGATVQVKGTATGSITDFDGNYTIKANKGAVITFSYIGY 85
            +H QN  +  G + DE + P+ G  ++   +   ++TD  G ++I+AN   VI FSY+GY
Sbjct: 19   VHIQNRKIITGTVSDEKNMPIPGVGIKNISSGKTAVTDEAGKFSIEANPNDVIRFSYVGY 78

Query: 86   KTQEIKFTGQSPLNVKMIP-DNQTLDEVVVVGYGTMKRSDLTGSVASIAAKDVEGFKTSS 144
            + +++    ++ ++VKM+P +   LDEVVV+GYG++K++DLTGSV  + A +++   +SS
Sbjct: 79   QNKDVTVGNEANISVKMVPAEANKLDEVVVIGYGSVKKTDLTGSVGVVKASELQERPSSS 138

Query: 145  VAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDGFEV---------D 195
            +  AL G+I+GVQ+ +  G PG   +I IRG  ++   ++PLY+VDG  +         +
Sbjct: 139  LNQALAGRISGVQVNTNSGRPGGQTNIKIRGFSSINTSNNPLYVVDGVALPVGSQTQNSN 198

Query: 196  DIDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGSASYRKIS 255
             IDY++ SDI S+EVLKDASS+AIYGAR ANGV+LITTK G      ITY+       ++
Sbjct: 199  AIDYINPSDIASVEVLKDASSTAIYGARGANGVILITTKKGSANAQRITYDADFGVNTLA 258

Query: 256  KK-LDVLSPYEFVKLQG---EVNSKYSDSYFKPGN-DDNDIPYRYQ-SLDDYMGVKG--- 306
               + +L  +E+VK+Q    E    Y    +  GN     +P   + +L  +    G   
Sbjct: 259  AHHVKMLDAFEYVKVQDLAYENIKVYDPVGWAAGNYASTPVPKASRIALPQFFDGNGNPL 318

Query: 307  --VNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQ 364
               +W  E+     SQ+H L   GG ++S Y        + G+  NS   + +G+F  D 
Sbjct: 319  YNTDWLKESTQNKLSQNHQLGFTGGNENSTYGVFAGYRDDQGLLLNSYLKRYSGRFNFDS 378

Query: 365  KLSKSLSFNITVNYALTNRKGVGTSADSGRFNMLAQILSARPTGGLKLTDDELLDSAIDP 424
            K+   L     ++Y   N+        +G  N +  I  A P   +KL D +  D+ + P
Sbjct: 379  KIKPWLKVGGNLSY--NNQDENIVDQGTGGLNSVRMITEAFPFLPIKLADGKWGDNKLIP 436

Query: 425  EMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTAGTYNTTNNRTN 484
               E G +   +   ++   +T T    ++S   +IS+   K L F+T    N  +   N
Sbjct: 437  -WAEGGSNPVHILTDQKYGMITQTALGSIYS---TISFN--KDLEFRTQLGANVVSRNIN 490

Query: 485  IFYKDGSKEAY--RNGQKPYGRTQMGRDVRWTNFNNLTWKQK-VKKHNYDVMLGHEVSFR 541
             +    +K+ Y   +GQ         R+  W+  N LT+ ++  + H  + +LG  +S++
Sbjct: 491  EY---NAKQLYGISDGQNGTANVTNDRETFWSLENYLTYNKRFAESHAINALLG--ISWQ 545

Query: 542  STEYL--LGEAMDFPFDNLGNDYLGLGATPSKVESSYSEKMLLSFFARGNYNYDNRYLLT 599
            +T +      A +F  D  GN+ +G G+    V SS +     S+F R NY + ++YL+T
Sbjct: 546  ATSFFSNTSHAENFVTDFYGNNNMGSGSKSITVGSSRNRSAFNSYFGRLNYAFKDKYLVT 605

Query: 600  ATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGWGIVGNDRISN 659
             T R DGS+ F   +K+ FFPS + AW+ S+E F+K    +SN K+R  +G+ GN  +  
Sbjct: 606  FTGRVDGSSKFGENHKFAFFPSAALAWKASDEDFLKGNKTISNLKLRTSYGLSGNSELPA 665

Query: 660  YLSMDLYEASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRLNVTADFF 719
            Y S+     +   + +  VT +   +L N +L WE ++ ++ G++LG  +NR+N+ AD +
Sbjct: 666  YQSLATLVNNSAIINDGKVTGIGIGRLANPDLVWEKTAQVDAGLELGLFNNRINLEADLY 725

Query: 720  VKNTKDLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTRDFSWQTNFNISFIK 779
             + T D+LL   +   TG+    +NIG +QNKG++L +N+ NIQT DF+W+T+FNIS  +
Sbjct: 726  YRKTTDMLLDAPVPRTTGYSVIRKNIGSMQNKGLDLGINTVNIQTDDFTWKTSFNISLNR 785

Query: 780  NTLKGLASGVESMYARSGFDSNFTAYDYIATVGQSLGLIYGYEFDGVYQSSDFYTTPDNQ 839
            N +  LA+  +        + NFT    I  VG+ +G  +G    G +  ++        
Sbjct: 786  NKVLSLATPDDIFGVG---NPNFTNQTGIIRVGEPVGSFWGLVRLGTWSEAE-RAEAAKY 841

Query: 840  LILKEGVTNNARYGTVKPGVVKYKDQDGDGIITTNDRTVIGNAMPKWFGGITNTFDYKGI 899
            +  + G        T+ PG +KY D +GD  IT  DR +IGN  PK +G   N+F YK +
Sbjct: 842  VSYRGG-------KTLLPGDIKYLDVNGDHAITDADRQIIGNGTPKGWGSFGNSFRYKNL 894

Query: 900  DFSFMLQFNYGNDIYNATRLYSTQSRNGRRNMLAEVADRWSPTNTSNLVPS----QDGYI 955
            +    LQ++YGND+ N T  +S + R  + N  A V + W+P N +  + +      GY+
Sbjct: 895  ELIVELQYSYGNDVLNMTH-HSGEDRQVQANSFASVLNAWTPQNQNTPIAAIRDQSAGYV 953

Query: 956  VNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATGQNLFCVSGYSGYDPE 1015
             N V + ++EDGSF+R KN+ LGYT       K  +S+LR+YA+ QN F  + Y+G DPE
Sbjct: 954  TN-VDTHWLEDGSFIRGKNLLLGYTFDKTLVEKLRLSKLRVYASVQNFFLATKYTGNDPE 1012

Query: 1016 VNSASNTPMTPGLDWGAYPKSRVFTFGIDL 1045
            V +  N     G  +  YPK   F  G+++
Sbjct: 1013 VTTYGNA-FAQGQTFFDYPKPTTFMVGLNI 1041