Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 509 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  128 bits (321), Expect = 6e-34
 Identities = 156/577 (27%), Positives = 240/577 (41%), Gaps = 93/577 (16%)

Query: 1   MKKIIYYIAMSVMCLLPFSCS--LEEETRTEVEKKNYMNNAEEAKDVLLGVYRTNTLDAM 58
           MKK   Y    V+ +   SC   LE   +  +   NY     +A   L+ +Y      + 
Sbjct: 2   MKKNFLYFTAVVLSVSLGSCKKDLEVNPQDRITLDNYYKTQADAFTGLVAIYDRFAYQSG 61

Query: 59  YGYYLSILFNLGTDISQVEGSGN----ENFRIIPTNSFPTTQSEVQQTWAALYTGIYRAN 114
             Y  S + ++  D  Q+ G G      + +++ T +   +       W+  Y+GIYR N
Sbjct: 62  GLYDKSAVMSVAGD-DQLAGGGGPSDINDLQVMQTYTLNASTGPQGYLWSRGYSGIYRVN 120

Query: 115 DFLERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPA 174
             L++I +        D  L   YIAEA+ +R  FYF+LV  F NV ++  T +  ++  
Sbjct: 121 VLLQKIVD-----IPMDATLKARYIAEAKTMRAAFYFDLVTFFKNVPIIEGT-VDPKDLY 174

Query: 175 TYVQSAPEKVYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGY 234
             VQ+AP  VY Y+E DL    D +P   +     +   R +KGAA  LL KV       
Sbjct: 175 NVVQAAPAAVYAYVEKDL---ADAIPGLPNTVPAATEGGRLTKGAAQALLGKV------- 224

Query: 235 PVKDESKWEAAAKTARIL------VESGKHG--LLKDYEQLWK--NTCNGTWDPTESLIE 284
            +  + KW+AAA    ++      V    +G  L+ ++  LWK  N  N     +E++IE
Sbjct: 225 -LLYQKKWQAAADQFAVVNGTAPGVSPSVYGYKLIPNFGDLWKPSNKFN-----SEAIIE 278

Query: 285 ISFYSPTVSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWREDVSDIRRD 344
              +S   +GN    G      G   +   G RG      K V T   D+    S +   
Sbjct: 279 F-VHSNKSNGNWSAAGNS---EGNLLSITTGPRGYS----KTVST-APDYFSGYSFLVFT 329

Query: 345 LSIANYQYTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSF 404
            +  ++ + D + +  VA       +   K      A  N   Y  AK+     +TT + 
Sbjct: 330 KAFFDFIHFDPRNAATVANLDSLQTNGIAK----YTAGYNNTGYFFAKY---MGLTTQAA 382

Query: 405 INNDKSN--VNWYFLRYADVLLLYAEALNE--WKHGPDAEAYNAINAVRRRGYGNPSNTS 460
            N  + N  ++ Y +R AD  L+ AEAL       G  + AY  +NAVR R   NP   +
Sbjct: 383 ANTPELNFGIDEYEIRLADTYLMEAEALMNAGAAVGAGSRAYALLNAVRARVGLNPVAVT 442

Query: 461 ACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEGTG 520
             +             + KER  EL+ EG R  DL+RWG       AT    G+      
Sbjct: 443 QAN-------------IEKERRLELAGEGQRFPDLVRWG----KAAATLASKGF------ 479

Query: 521 SPNYSVATYTEEGKHELFPIPQRDMDLCIQFNQNPKW 557
                       G+HE+FPIPQ +++   +  QN +W
Sbjct: 480 ----------IAGRHEVFPIPQGELN-NTKIEQNKEW 505