Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 507 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  119 bits (297), Expect = 4e-31
 Identities = 130/532 (24%), Positives = 235/532 (44%), Gaps = 77/532 (14%)

Query: 1   MKKIIYYIAMSVMCLLPFSC--SLEEETRTEVEKKNYMNNAEEAKDVLLGVY---RTNTL 55
           MKK    + +++  ++ FSC  SLE +  + + +KN      +A   +  VY   +  ++
Sbjct: 1   MKKYNIILLLTIALVIQFSCKKSLEPKVYSILTEKNAFVTKSDAIAGVNAVYARLKGPSV 60

Query: 56  DAMYGYYLS---ILFNLGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYR 112
              Y Y+      L +L TD+   +  G+     +    + ++   + + W  +Y  I  
Sbjct: 61  GDNYDYWTVRHFALTDLTTDLGHCDYGGDPGQ--LSNIQWNSSNGLILEDWRQIYKLIAN 118

Query: 113 ANDFLERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQN 172
           AN  +  I+  + S T  +K   + ++AE R LR + Y ++   +G  VL+T  +M+ ++
Sbjct: 119 ANVAISNIT-PMKSITDAEK---SKFLAEIRFLRAIAYMDITDIWGPSVLITEKEMAAKD 174

Query: 173 PATYVQ-SAPEKVYEYIEDDLLYACDILP--YATDDQYRESNDYRFSKGAALGLLTKVYA 229
            +   Q ++   + +Y+  +L YA   LP  Y  +  Y  ++  R +KGAALG+L K+Y 
Sbjct: 175 YSAKPQLTSLADMNKYLIGELEYAAANLPLNYVNNPIYPNNDVGRATKGAALGMLAKLYL 234

Query: 230 TWAGYPVKDESKWEAAAKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYS 289
                    + +W+ AA   + +++   + L   Y  L+  +   TW      +E + +S
Sbjct: 235 R--------DHQWQKAADYCQQVIDLKVYDLYPTYAGLFAES--NTW-----CVE-NIFS 278

Query: 290 PTVSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWREDVSDIRRDLSIAN 349
                N +    +  +  ++   +       A      ++F      + +D R+ +  A 
Sbjct: 279 VLSDANVNGTELLNHFGPLEHPVLTERWQYYAVTWDFYNSF------NNADDRKKMFFAE 332

Query: 350 YQYTD--------TKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTT 401
           Y  TD        T  ++  AG       A  K ADP  A                    
Sbjct: 333 YTGTDNLIHKQAPTLGAIAPAGVLYMPNVATSKYADPNGA-------------------- 372

Query: 402 NSFINNDKSNVNWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNTSA 461
           N++ +    N+    LRYAD+LL  AEALNE   GP  E+   +N V+RR +      + 
Sbjct: 373 NTYYDGHSVNI----LRYADILLSRAEALNEINGGPSTESIELVNKVKRRSHATELVLA- 427

Query: 462 CDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELG 513
                 L++++FR+A+ +ER +EL +EG RR DL+R G Y + V A    +G
Sbjct: 428 -----NLNQSTFRDAILQERGWELFYEGKRRADLVRMGKYEQVVNAYLARIG 474