Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 536 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  146 bits (368), Expect = 2e-39
 Identities = 160/577 (27%), Positives = 249/577 (43%), Gaps = 64/577 (11%)

Query: 3   KIIYYIAMSVMCLLPFSCS--LEEETRTEVEKKNYMNNAEEAKDVLLGVY---------R 51
           KI+ Y A+S+  L   SC   L E     +++  Y     +A + +  VY          
Sbjct: 2   KILKYTALSLAILSTVSCKKFLTENPDGLLQENEYYKTQADAINAVNAVYFSLNQGVAGA 61

Query: 52  TNTLDAMYGYYLSILFNLGTDISQVE-----GSGNENFRIIPTNSFPTTQSEVQQTWAAL 106
           +  L   Y    + LFN G +++  +     G+ N + R +   S  +    V + W   
Sbjct: 62  SGILQTPY----NTLFNTGMNMADDDEDPGPGATNADVRSLSVLSHSSGNLRVYEIWQQH 117

Query: 107 YTGIYRANDFLERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTST 166
           Y  I RAN  ++RI        T D  L +  IAEA+ LR ++YF LVR FG V L+T+ 
Sbjct: 118 YATIRRANIAIDRIPT-----ITFDATLKSRLIAEAKFLRALYYFNLVRLFGGVPLITAQ 172

Query: 167 Q-MSNQNPATYVQSAPEKVYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLT 225
           Q     +     +S P++VY  IE DL+ A   LP      Y   N  R +KGAA  LL 
Sbjct: 173 QEFIKASDYAIAKSTPQQVYGQIEKDLIEAAIDLPAT----YVSPNVGRATKGAAKALLA 228

Query: 226 KVYATWAGYPVKDESKWEAAAKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEI 285
           KVY T A  P+   +K+  A + A  ++     G       L+ N  +     T++  E 
Sbjct: 229 KVYLTEASQPLNITAKYADAVRLAEEVLSPADGGTGNYGYGLFDNYADAFLPATKNGKE- 287

Query: 286 SFYSPTVSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHT-----FVLDWREDVSD 340
             +S     NS   G   + +    + + G+ G+ A  V+         F +      +D
Sbjct: 288 HIFSVQFKSNSQGQGN-NETSRAILSNVPGLSGNYAHMVRYYTVGTDKYFSIYKLYTPAD 346

Query: 341 IRRDLSIANYQYTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVT 400
            RRD +      + T  +L+  G     ++   K  DP    +     TP      K+  
Sbjct: 347 KRRDATFVKAFQSPTNGNLYSLGID--GKTYVYKTTDPVPTAE----LTPF---FNKFWD 397

Query: 401 TNSFINNDKSNVNWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNTS 460
            NS     ++  N   LRYAD+LL++AEA NE  +GP A+A++++N VR R     +   
Sbjct: 398 PNSTTLTAEAAANVNILRYADLLLIHAEAENE-LNGPSAKAFSSLNRVRGR-----AGLG 451

Query: 461 ACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEGTG 520
           A  L    D+ +FR+A+  +R  EL +E  R  DLIR        +  A     +     
Sbjct: 452 ALSLINTPDKNAFRDALYLDRRLELVYEYERWFDLIR--------EKDAAGNSIFVSSLH 503

Query: 521 SPNYSVATYTEEGKHELFPIPQRDMDLCIQFNQNPKW 557
               ++AT     K+ L+PIPQ +++      QNP W
Sbjct: 504 KVGKTIAT----EKNRLYPIPQAEIENNPLLKQNPGW 536