Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 472 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  109 bits (272), Expect = 3e-28
 Identities = 135/536 (25%), Positives = 224/536 (41%), Gaps = 102/536 (19%)

Query: 32  KKNYMNNAEEAKDVLLGVYRTNTLDAMYGY-----YLSILFNLGTDISQVEGSGNEN--- 83
           KK+++N   + +   +  ++T   DA+ G       L    N+  +   +E +G++    
Sbjct: 8   KKDFLNVPPQGQQPSVTFWKTQD-DALKGVNAIYAQLRSWDNVAFNAIAIESTGSDEADK 66

Query: 84  ---------FRIIPTNSFPTTQSEVQQTWAALYTGIYRANDFLERISNKIGSYTTTDKKL 134
                    F +    +  +TQ  +Q  W   Y  I   N  L+ + N IG     D  L
Sbjct: 67  GSTPTDATFFNLFDQFTVTSTQGSLQGFWTGQYQNINLCNQVLDNVPN-IGM----DASL 121

Query: 135 ATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQSAPEKVYEYIEDDLLY 194
               +AEA+ +R   YF LVR +GNV L  +    N +     QS    VY  IE DL  
Sbjct: 122 KARILAEAKFIRAYSYFRLVRAYGNVPLRLTVPKDN-SEYNIPQSDKAVVYAQIEKDLTD 180

Query: 195 ACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDESKW-EAAAKTARILV 253
           A  +LP      Y  ++  R +KGAALG+  KV    A Y    + KW +  A T +++ 
Sbjct: 181 AAAVLP----QSYASTDLGRATKGAALGMKAKV----AMY----QKKWADVLALTNQVMT 228

Query: 254 ESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSPTVSGNSDPVGRIGKWNGVKTTAI 313
               + L  D+E+ ++     +    ES+ E+   +  +  NS         +  + + +
Sbjct: 229 LG--YDLFPDFEKGFRVANENS---VESIFEVQ--AELLPSNSAA-------SNSQYSQV 274

Query: 314 AGVRGSCAANVKVVHTFVLDWREDVSDIRRDLSIANYQYTDTKKSLWVAGASDTDESAAE 373
            GV G            V+ W  +      +   A ++  D +K   +    +T      
Sbjct: 275 QGVAG------------VMGWGFNTPSAELE---AAFETGDPRKDATILFRGETTPQGDL 319

Query: 374 KDADPTKAQKNKQNYTPAKWDIQKYVTTNSFINNDKSNVNWYFLRYADVLLLYAEALNEW 433
                  A+ N+++Y P    +  +        N+ +  N   LR++D+LL+ AEA NE 
Sbjct: 320 VPTTVPNARYNQKSYVPFNTRVSGF--------NEGAQQNIRVLRFSDILLMNAEAANEL 371

Query: 434 KHGPDAEAYNAINAVRRRGYGNPSNTSACDLPQ--GLDETSFREAVRKERSYELSFEGHR 491
             G +A+A  ++N VR+R  G     S   LP     D+T+ R A+ KER  EL+ E  R
Sbjct: 372 --GNNAQALTSLNRVRKRARG----ASVTILPDVTTTDQTALRNAIWKERQVELAMENDR 425

Query: 492 RQDLIRWGIYYKTVQATAKELGYWWEGTGSPNYSVATYTEEGKHELFPIPQRDMDL 547
             D+IR G      +A A      W+                K+E++P+PQ ++DL
Sbjct: 426 YFDVIRQG------RALAIFGPKGWKA--------------NKNEVWPVPQTEIDL 461