Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 620 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  139 bits (350), Expect = 3e-37
 Identities = 134/466 (28%), Positives = 205/466 (43%), Gaps = 49/466 (10%)

Query: 1   MKKIIYYIAMSVMCLLPFSCS-LEEETRTE-VEKKNYMNNAEEAKDVLLGVYRTNTLDAM 58
           MK+I  YI +        SC  + + T TE V   NY N A E +  L GVYRT     +
Sbjct: 1   MKRI--YITLIFFAAAMCSCKKVLDTTPTEFVTPTNYYNTAAELQTALNGVYRTLATSGL 58

Query: 59  YGYYLSILFNLGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRANDFLE 118
           Y    S   N+ TD      +G     +    ++ +  + V   W  LY GI RAN  +E
Sbjct: 59  YQAIYSFHLNISTDEVCTRATGVPQETMY---NYDSNNASVTTMWRDLYFGIERANLLIE 115

Query: 119 RISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQ 178
            I+         D+   +L   E   LR  FYF L   FG+V L+     S Q+    V 
Sbjct: 116 NINKP-----AMDESKRSLIKGETLFLRAYFYFILASNFGDVPLILKPTGSIQD--VNVA 168

Query: 179 SAPEK-VYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVK 237
             P+K V+  +  D+  A  +L  A+    +  +    ++ A   +L KV    AG+P+ 
Sbjct: 169 RTPQKDVFNQVLADMTTAEGLL--ASQKTTKVVSSGVVTQTAVQAILAKVCLRMAGFPIN 226

Query: 238 DESKWEAAAKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSPTVSGNSD 297
           D SK+         ++ SG+H L  +Y+Q++ N     +D  ES+ E+ FY   V+    
Sbjct: 227 DISKYNDVLTWTNKVINSGEHALNPNYQQIFINIAQDKYDIKESMWEVEFYGSNVTIYGA 286

Query: 298 PVGRIGKWNGVKTT--AIAGVRGSCAANVKVVHTFVLDWREDVS-----DIRRDLSIANY 350
             G +G + G  ++   I G  G    + K+  ++ +D     +     D+RRD + ANY
Sbjct: 287 GGGALGNYMGTPSSDLNIGGSAGWLTVSKKLFDSYDVDPASTANPKVSFDLRRDWNCANY 346

Query: 351 QYTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSFINNDKS 410
                    W  G     +SA   +     A K ++ Y  A                DK+
Sbjct: 347 N--------WGTGIPGV-KSAPITNPWLMYAGKFRREYEVA-------------TPKDKN 384

Query: 411 NV--NWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYG 454
               N+  +RYADVLL+ AEA N + +GP  +AY+ IN +RRRG+G
Sbjct: 385 TTPQNYPIIRYADVLLMRAEAEN-YINGPTPQAYSDINQIRRRGFG 429



 Score = 62.0 bits (149), Expect = 7e-14
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 6/105 (5%)

Query: 457 SNTSACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQ-----ATAKE 511
           ++ +  DLP  L +  F++A+R ER+ EL +EG RRQDLIRWG +Y  ++     A A  
Sbjct: 514 TSATDADLPANLSKDDFQKAIRDERARELCYEGVRRQDLIRWGNFYNDMKDFLAYALANG 573

Query: 512 LGYWWEG-TGSPNYSVATYTEEGKHELFPIPQRDMDLCIQFNQNP 555
           +     G  G+   +        ++ L PIPQ D+ L     QNP
Sbjct: 574 VPNLTNGQPGATGPATPANNVSPRNLLLPIPQYDISLNTSLTQNP 618