Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 544 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  114 bits (286), Expect = 7e-30
 Identities = 143/567 (25%), Positives = 226/567 (39%), Gaps = 69/567 (12%)

Query: 19  SCSLEEETRTEVEKKNYMN--NAEEAKDVLLGVYRTNTLDAMYGYYLSI---LFNLGTDI 73
           SC  +  T+  VE+ +  +  N ++ + +L+  Y       +   +  I   L + GTD 
Sbjct: 18  SCEKDVFTQLPVERTDLSDIFNPKDREGILIDEYLAGIYAQLPNGFNRIGNNLLDAGTDD 77

Query: 74  SQVEGSGNENFRIIPTNSFPTTQ---SEVQQT-WAALYTGIYRANDFLERISNKIGSYTT 129
           +      + +  +   + F T Q   S++ +  W   Y  I R N  L  I    G+   
Sbjct: 78  AL-----SGDISVTAVDKFKTGQWGPSDLPENPWVTSYMAIRRVNILLANI----GTSGI 128

Query: 130 TDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQSAPEKVYEYIE 189
            D K   L   +ARALR +FYFELV+R+G V L+        +     ++   +  +YI 
Sbjct: 129 PDVKKDALRF-QARALRIIFYFELVKRWGGVPLIGDKVFVLNDNLQLPRNTRAECVDYI- 186

Query: 190 DDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAG---YPVKDESKWEAAA 246
              L  C+ L              R SKG  L L +++    A     P  D  KW+AAA
Sbjct: 187 ---LAECEFLKDKLPATLTAGEVGRLSKGVVLALKSRLLLYEASPLYNPSNDVVKWQAAA 243

Query: 247 KTARILVESGKHGLLKDYEQLWKNTCNGTW-------DPT--ESLIEISFYSPTVSGNSD 297
           K A  L++   + L  ++  ++    N  +       D T  ESL E   Y     G +D
Sbjct: 244 KAADDLIKLNSYSLEANFGTMFTTRSNKEFILAYQQADNTSIESLNEPPGYKRAGQGITD 303

Query: 298 PVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWREDVSDIRRDLSIAN--YQYTDT 355
           P   +         A   + G         +     +++   D R  L+I +  + +  +
Sbjct: 304 PTQNL-------VDAFPMLNGKAIGEAGSGYNAADPYKD--RDPRFYLTIFHNGFSWLGS 354

Query: 356 KKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSFINNDKSNVNWY 415
               +V G ++T                 K  Y   K+     +T+ S      +  N+ 
Sbjct: 355 PVETFVGGKNNTRIGIG---------MGTKTGYYMRKF----MITSGSATGFSSATHNFP 401

Query: 416 FLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNTSACDLPQGLDETSFRE 475
             RYA++LL YAEA NE    PDA  Y  IN +R+RG      ++       LD+   R 
Sbjct: 402 IFRYAEILLNYAEAQNEVLAAPDASVYKVINDLRKRG-----GSTGVFAQGSLDKAQMRA 456

Query: 476 AVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEG----TGSPNYSVATYT- 530
            +R ER  EL+FE HR  D+ RW I    +  + K +          T  PN  V T T 
Sbjct: 457 IIRNERRIELAFEEHRFWDIRRWKIAENVLNGSLKGMKIIQNADKTFTYDPNVVVQTVTF 516

Query: 531 EEGKHELFPIPQRDMDLCIQFNQNPKW 557
           +  K  L+P+P  ++       QNP W
Sbjct: 517 DAAKMYLYPVPYLEIQKNSALVQNPGW 543