Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 480 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  116 bits (290), Expect = 2e-30
 Identities = 135/512 (26%), Positives = 201/512 (39%), Gaps = 86/512 (16%)

Query: 5   IYYIAMSVMCLLPFSCSLE--EETRTEVEKKNYMNNAEEAKDVLLGVYRTNTLDAMYGYY 62
           I+ + M++  +   SC  E  E+ +  V  +N+     +A   + G Y       + G +
Sbjct: 6   IFAVFMTIALMFGTSCKKELTEDPKAFVSPENFFKTDADAVMAVNGAYFW-----LVGTH 60

Query: 63  LSILFN------LGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRANDF 116
              LF       L  D   +   GN+       N  P         W  LY GI  ++  
Sbjct: 61  PQRLFQQELWSYLDEDCDAIFTWGNKG----ALNLTPINGGYASTIWNGLYRGIQTSSQV 116

Query: 117 LERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATY 176
           ++R+S K GS    D+      +AEAR LR ++Y+ +   F +  L+      +   A  
Sbjct: 117 IDRVS-KSGSSPIKDRA-----VAEARFLRALYYYYVTGVFRDGPLVDEVNYLDNGTAAK 170

Query: 177 VQSAP-EKVYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYP 235
           +   P +K+ +++  DL  A  +LP    D Y  +N  R +K AA  LLTKV+  W    
Sbjct: 171 LPRTPADKIRDFMIKDLEAAIKVLP----DSYEAANKGRATKAAAQTLLTKVFL-W---- 221

Query: 236 VKDESKWEAAAKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSPTVSGN 295
              +  W AA  TA+ +       LL +Y+ ++           ES+ EI F    ++  
Sbjct: 222 ---KKNWTAALTTAQAVTG---RVLLPEYKDVFTEANEFN---NESIFEIDFQKDNLNSY 272

Query: 296 SDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWREDVSDIRRDLSIANYQYTDT 355
                   K  GV   +     G        V  F      +  D R+DL IA       
Sbjct: 273 QHAFYSPQKKVGVSPFSEKPWYGGYVPLNSFVDGF------EAGDKRKDLEIAT------ 320

Query: 356 KKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSFINNDKSNVNWY 415
                             K+  P         + P  W +              S +N  
Sbjct: 321 --------------GYMGKNFIPDPENGVSVWFGPKWWRLDA--------GERNSGLNII 358

Query: 416 FLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNTSACDLPQGLDETSFRE 475
             RYADVLL+ AEA NE   G  A A+ AIN VR R   +  N        GL +   R 
Sbjct: 359 IFRYADVLLMEAEAANE--AGDQATAFTAINKVRARAGLSALN--------GLTQELLRA 408

Query: 476 AVRKERSYELSFEGHRRQDLIRWGIYYKTVQA 507
           A+ KER  EL  EGHR+ DL+RWG++ KT +A
Sbjct: 409 AIMKERGIELCGEGHRKLDLVRWGLWLKTAKA 440