Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 631 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  169 bits (428), Expect = 3e-46
 Identities = 136/452 (30%), Positives = 209/452 (46%), Gaps = 54/452 (11%)

Query: 21  SLEEETRTEVEKKNYMNNAEEAKDVLLGVYRTNTLDAMYGYYLSILFNLGTDISQVEGSG 80
           ++E E  +     N+ +N  EA    LGVY   +  + YG+ + ++++  TDI Q EGS 
Sbjct: 29  AVETEPYSFFTSDNFFSNETEAYSATLGVYDIMSDRSTYGFNIPLVYDNDTDIGQTEGSN 88

Query: 81  -NENFRIIPTNSFPTTQSEVQQTWAALYTGIYRANDFLERISNKIGSY---TTTDKKLAT 136
             +++R+IP  +    ++    TW A Y GI RAN  L RI  ++G Y   T   K    
Sbjct: 89  LADDYRVIPHYNGTPERAAFLDTWTAFYKGIDRANVVLARIP-QMGIYSSGTQAQKDALN 147

Query: 137 LYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQSAPEKVYEYIEDDLLYAC 196
             +AEA+ LR  +Y ELV  +G+V   T+   +  +    V    E +Y++I  ++  A 
Sbjct: 148 RNMAEAKFLRAFYYSELVHYWGDVPFKTTPSQTGDDFKLPVTDRYE-IYKFILKEMQEAA 206

Query: 197 DILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDESK-----------WEAA 245
           D LP A         D R +K AA  +L +V     GY +   SK           +  A
Sbjct: 207 DALPTALP------TDERINKWAAKAMLARVALYAGGYSLSRTSKQMERPANYREYYTLA 260

Query: 246 AKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSP---TVSGNSDPVGRI 302
            +    ++   ++ L   Y Q++KN C G  +PTE++ +I+F++    T SGN+     +
Sbjct: 261 KQQIDDVIAQNQYKLNPSYSQVFKNQCQGVLEPTENIFQIAFFNSDNNTTSGNA-----L 315

Query: 303 GKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWREDVSDIRRDLSIANYQYTDTKKSLWVA 362
           G   G   TA+ GV  S       V  F   +     D RRD SIANY            
Sbjct: 316 GVIYGTPVTAL-GVYFSTNGRTLAVRPFYDSFA--TGDARRDFSIANY------------ 360

Query: 363 GASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSFINNDKSNVNWYFLRYADV 422
               T ++   K   P    +  +++  AKW   +       I    + +N+  +RYAD+
Sbjct: 361 ----TIDALGNKQ--PQTLARADESWRAAKWS--REYQKQELIERGGTRINYVVMRYADL 412

Query: 423 LLLYAEALNEWKHGPDAEAYNAINAVRRRGYG 454
           LL+ AE  NE  +GP+  AY AIN VRRR YG
Sbjct: 413 LLMRAEVENELNNGPNTLAYEAINQVRRRAYG 444



 Score = 70.1 bits (170), Expect = 2e-16
 Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query: 456 PSNTSACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYW 515
           P++T+A DL  GL + +F +AV++ER++ELS+EG RR DLIRW    +++  T  ++   
Sbjct: 534 PTSTNA-DLQSGLSKDAFFKAVQQERAWELSYEGLRRADLIRWNALKQSIDDTNTKVK-- 590

Query: 516 WEGTGSPNYSVATYTEEGKHELFPIPQRDMDLCIQFNQNP 555
                + NY        GKHELFPIP  ++D+     QNP
Sbjct: 591 -AIRSNYNYPAPANFITGKHELFPIPLSEIDVNKNIKQNP 629