Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 542 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  122 bits (305), Expect = 5e-32
 Identities = 150/580 (25%), Positives = 245/580 (42%), Gaps = 71/580 (12%)

Query: 6   YYIAMSVMCLL-PFSCSLEEETRT------EVEKKNYMNNAEEAKDVLLGVYRTNTLDAM 58
           Y I ++++CLL  F CS + E         ++       NA+ AK  L G Y    L   
Sbjct: 4   YKIYIAIICLLFAFGCSKKFEAEPLDRITGDLIFDPLDKNADYAKQFLNGTYLL--LPDW 61

Query: 59  YGYYLSILFNLGTD--ISQVEGSGNENFRI--IPTNSFPTTQSEVQQTWAALYTGIYRAN 114
           Y        + GTD  +    G+  E +R   I + + P         W+  Y GI RAN
Sbjct: 62  YNRIDGSFLDAGTDDAVPSRIGTQAEFYRTGRISSTTLP------DDVWSKNYLGIRRAN 115

Query: 115 DFLERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPA 174
            FL ++         T   L T + AEAR LR  FYFELV+R+G V L+     +  +  
Sbjct: 116 LFLSKVD-----VVPTTAVLKTQFKAEARFLRAYFYFELVKRWGGVPLIGDKVYTINDDI 170

Query: 175 TYVQSAPEKVYEYIEDDL-LYACDILPYA-TDDQYRESNDYRFSKGAALGLLTKVY---A 229
              ++  ++ Y YI  +L      +LPYA TD  +  +N      GAA+ L ++V    A
Sbjct: 171 NVPRNTLDECYAYIVAELDAIKSSLLPYAITDGDWGRAN-----IGAAMALKSRVLLYAA 225

Query: 230 TWAGYPVKDESKWEAAAKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYS 289
           +    P  +  KW  AA+ A  +   G + L+ D    W    N T +     I+ +  +
Sbjct: 226 SPLSNPTNNIQKWALAAQAAADVKALG-YTLVTD----WVANFNATKNTEFIFIKQNVLN 280

Query: 290 PTVSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWREDVSDIRRDLSIAN 349
             +  N+ P+G +    G+         G  + +  +V  F++   + +SD       +N
Sbjct: 281 TNIEINNGPIGYL---QGL---------GLTSPSQNLVDAFLMLDGKAISDAGSTYD-SN 327

Query: 350 YQYTDTKKSL----------WVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYV 399
             Y +    L          W+    +T E   +K        + +  Y   K+ + K+ 
Sbjct: 328 NPYLNRDPRLTATIMHNGKNWLGRPVETFEGGQDKPGG--NRTQTRTGYYLRKF-MGKFE 384

Query: 400 TTNSFINNDKSNVNWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNT 459
           T+ ++ N     +    LRYA++LL +AEALNE   G  A+  N +  +R+R    P + 
Sbjct: 385 TSTTYTNQAHHVI---LLRYAEILLNHAEALNE-SGGAVADIVNNLVLIRKRAGILPGSN 440

Query: 460 SACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEGT 519
           +   L   L +   R+ ++ ER  EL+FE HR  DL RW +    +    + +     GT
Sbjct: 441 NLYGLSLTLSKDELRKIIQNERRIELAFEEHRTWDLRRWKLAEIELNKPVRGVQIIKNGT 500

Query: 520 --GSPNYSVATYTEEGKHELFPIPQRDMDLCIQFNQNPKW 557
                 ++ A    + K   +PIPQ ++    +  QNP W
Sbjct: 501 AYSYTYFNAANAVFDTKMYWYPIPQAEILANNKMVQNPGW 540