Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 590 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  125 bits (315), Expect = 4e-33
 Identities = 156/612 (25%), Positives = 244/612 (39%), Gaps = 81/612 (13%)

Query: 1   MKKIIYYIAMSVMCLLPFSCSLEEETRTEVEKKNYMNNAEEAKDVLLGVYRTNTLDAMYG 60
           MKK I+Y+ ++ + L    C   +  +         N+  EA+      Y  N L+ +Y 
Sbjct: 1   MKKNIFYLILAFVALALAGCKKSDFLQDGSFSGG--NDITEAQLWANPDYARNFLNNVYA 58

Query: 61  YYLSILFNLGTDISQVEGS-----GNENFRIIPTNSFPTTQSEVQ---QTWAALYTGIYR 112
             LS  +NLG       GS      N+N  I   N+   T S V+     +A +Y GI +
Sbjct: 59  V-LSDRYNLGDGALLASGSDEAVNSNQNSSISTLNN--GTWSPVRTFDDVYADMYVGIRK 115

Query: 113 ANDFLERISNKIGSYTTTDKKLATLYIAE--------------ARALRGMFYFELVRRFG 158
           AN FLE++    GS      ++    +AE              A  LR  F FEL++R+G
Sbjct: 116 ANMFLEKVD---GSAIVPIDEVLPANVAENQTYAAQIERLKGQAYFLRAFFQFELLKRYG 172

Query: 159 NVVLMTSTQMSNQNPATYVQSAPEKVYEYIEDDLLYACDI----LPYATDDQYRESNDYR 214
           +  ++T T   N N        P   ++     +   CD     LP +  D +   N  R
Sbjct: 173 SFPIVTKTLTINDN-----LDLPRNTFDQCVAQISADCDAAIARLPISPAD-WNNVNRGR 226

Query: 215 FSKGAALGLLTKV--YATWAGY-PVKDESKWEAAAKTARILVESGKHGLLKDYEQLWK-N 270
            ++ +A+ L  ++  YA    Y P  D +KW+AAA  A+ L+++GKHG+   Y+ +W  N
Sbjct: 227 AAQTSAMALKARMLLYAASPQYNPTGDAAKWQAAADAAKRLIDTGKHGIFAAYQNIWLWN 286

Query: 271 TCNGTWDPTESLIEISFYSPTVSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTF 330
             N  ++        +  + T+  ++ PV   G       T             K +   
Sbjct: 287 ATNAAYNNEVIFATQTLNTNTIESSNAPVSYDGATGRTNPTQEMVDAFEMKTTGKAITDA 346

Query: 331 VLDWREDVSDIRRDLSIANYQYTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTP 390
              +        RD  +A     +T     V  A++      E             N T 
Sbjct: 347 NSGYVATNPYANRDPRLAFAIMFNTASVQPVVTANNFKGKPVETFVGGKDGLNLNVNATK 406

Query: 391 AKWDIQKYVTTNSFINNDKSNVN--WYFLRYADVLLLYAEALNEWKHGPDA--EAYNAIN 446
             + ++KY++ N+      +NV   W F RYA+VLL YAEALNE   GP A  E   ++N
Sbjct: 407 TGYYMRKYLSENAVWTGTATNVRRPWIFFRYAEVLLNYAEALNE-AQGPAALTEILKSVN 465

Query: 447 AVRRRGYGNPSNTSACDLPQGLDETS-------------FREAVRKERSYELSFEGHRRQ 493
           AVR+R     +   + D+P  L  T+              R+ +  ER  EL FE  R  
Sbjct: 466 AVRQR-KNTATPAQSVDMP-ALQTTNPSAAGYVAPTKEELRKRIHNERRVELCFEEQRFY 523

Query: 494 DLIRWG----------IYYKTVQATAKELGYWWEGTGSPNYSVATYTEEGKHELFPIPQR 543
           D+ RW              + VQ T     Y         ++V       K+ L+PI Q 
Sbjct: 524 DVRRWKEGEITFNKPVTGMRIVQLTPTTFSY-------TPFTVENRVFTAKNYLYPIAQN 576

Query: 544 DMDLCIQFNQNP 555
           +++      QNP
Sbjct: 577 ELNKAPGLGQNP 588