Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 506 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  135 bits (339), Expect = 5e-36
 Identities = 152/575 (26%), Positives = 238/575 (41%), Gaps = 90/575 (15%)

Query: 3   KIIYYIAMSVMCLLPFSCSLEEETRTEVEKKNYMNNAEEAKDVLLGVY-----RTNTLDA 57
           KI Y +    +  L     L+E  ++ +  + +   A +A   +  +Y      +     
Sbjct: 2   KIKYLLLAIAVASLSACVKLDENPKSFISPEQFYKTAGDAVSAVNAIYYPMVDNSTGAQP 61

Query: 58  MYG--YYLSILFNLGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRAND 115
           +Y   +Y  + F L  D+    GS N   R +   +  +T   +QQ W   Y GI +AN 
Sbjct: 62  IYNRLFYTGLDF-LTDDLDAGPGSPNAEVRALAKLTHASTNLRIQQIWTEHYEGINKANI 120

Query: 116 FLERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPAT 175
            LERI          D KL    + EA+ LR  +YF LVR +G+V L+   Q        
Sbjct: 121 ALERI-----PAIEMDGKLKNRLLGEAKFLRAFYYFNLVRLYGDVPLLLKDQTQLSIAEL 175

Query: 176 YVQSAP-EKVYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGY 234
            V   P E+VY  I +DL  A  +    +  +       R ++GAA+ LL+KVY T    
Sbjct: 176 QVPRTPKEQVYLQIINDLETAASLFKAGSGGEAG-----RATEGAAVALLSKVYLT---- 226

Query: 235 PVKDESKWEAAAKTARILVESGKHG--LLKDYEQLWKNTCNGTWDPTESLIEISFYSPTV 292
                  W  A K A  ++ +G +G  L  DY Q++         P     +   +S  +
Sbjct: 227 ----RRDWANAVKYAEAVI-TGSYGYALFDDYAQVFL--------PAYKNGKEHIFSAQI 273

Query: 293 SGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVV-----HTFVLDWREDVSDIRRDLSI 347
            G++   G +   + ++ + + G++GS    +        + F L       D R+ +S 
Sbjct: 274 KGSTISTGHLITSSDIR-SGVPGLKGSYGNQLAFYTVGSDNFFSLYKLYSGKDKRKRVSF 332

Query: 348 ANY--QYTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSFI 405
             Y    TD KK   +    D+                    +    WD   Y +T +  
Sbjct: 333 VTYYTSPTDGKKYATINAPGDS------------------VPFINKNWD-PNYASTGN-- 371

Query: 406 NNDKSNVNWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNTSACDLP 465
               S+ N   LR+A+V+L+ AEA NE  +GP ++AY +IN +R+R           DL 
Sbjct: 372 ----SDANMNILRFAEVILIDAEAENE-LNGPTSKAYTSINKIRKR-------AGLADLT 419

Query: 466 QGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEGTG--SPN 523
            GL +  FR++V  +R  EL  E HR  DLIR        Q   +  G   EG G    N
Sbjct: 420 TGLTKDQFRDSVYLDRRLELVGECHRYFDLIR--------QTGTEVTGVGPEGKGILLKN 471

Query: 524 YSVATYTE-EGKHELFPIPQRDMDLCIQFNQNPKW 557
             +   T    +H L+ IPQ ++D   +  QNP W
Sbjct: 472 LKLVGKTNVAARHYLYAIPQGEIDRNPKLTQNPGW 506