Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 567 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  116 bits (290), Expect = 3e-30
 Identities = 167/599 (27%), Positives = 245/599 (40%), Gaps = 76/599 (12%)

Query: 1   MKKIIYYIAMSVMCLLPF---SCS---LEEETRTEVEKKNYMNNAEEAKDVLLGVYRTNT 54
           MK  I  I +S+   L F   SC    L+     EV+          A D +  +Y T  
Sbjct: 1   MKTTINLICISLTFGLLFTITSCKKSVLDRPLDIEVQDTLVFGYINYATDFVTDIYAT-- 58

Query: 55  LDAMYGYYLSILFNLGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRAN 114
           L   Y  + S      TD ++    GN ++R    +   T  S+    +A+ Y GI + N
Sbjct: 59  LPGGYTDFASTFNEAATDDARHGNPGNGSYRFTNDSWGITVNSD--DKYASCYAGIRKCN 116

Query: 115 DFLERISN----------KIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMT 164
            FL +I            KI  YT T++K     I E   LR  FY EL++R+G V L+T
Sbjct: 117 LFLSKIDLVKLKDHTTDVKINGYTATEQK--DRLIGEVLYLRAYFYAELLKRYGGVPLVT 174

Query: 165 STQMSNQNPATYVQSAPEKVYEYIEDDLLYACDILP----YATDDQYRESNDY-RFSKGA 219
                N +     ++  ++V + I DD   A   LP     A       SN Y R +K A
Sbjct: 175 QVLGVNDD-LDLARNTYDQVVKQIVDDCDAAALKLPTSYLIAGPRSISVSNYYGRATKWA 233

Query: 220 ALGLLTK--VYATWA-GYPVKDESKWEAAAKTAR-------ILVESGKHGLLKDYEQLWK 269
           A  L ++  +YA  A   P  D +KW AA   A+       +      +  +  YE L++
Sbjct: 234 AQALKSRTLLYAASAINNPNNDAAKWIAAYTAAKPFFDVTPVTPTMTLNPGIAGYEALFR 293

Query: 270 NTCNGTWDPTESLIEISFYSPTVSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHT 329
                    T SL EI +  P  + NS                I G  G    +  +V  
Sbjct: 294 GN-------TASLTEIIWSRPATNSNSLETANF-------PIGIDGSTGGINPSQALVDA 339

Query: 330 FVLDWR-EDVSDIRRDLSIAN-YQYTDTK--KSLWVAGAS-DTDESAAEKDADPTKAQKN 384
           + +    + +SD     + AN Y   D +   S++  GA   T  S    D      QK 
Sbjct: 340 YEMKTSGKPISDPTSGYNPANPYNDRDPRLAASIFYNGALFKTGRSIETFDGGLDGPQKV 399

Query: 385 KQNYTPAKWDIQKYVTTN-SFINNDKSNVNWYFLRYADVLLLYAEALNEWKHGPDAEAYN 443
             + T   + ++K++  N +      S  N+ + R A++LL YAEA NE   GP A+ Y 
Sbjct: 400 YGSLTG--YYMKKHLDVNLNLTQAQASQHNFIYFRLAEMLLNYAEARNE-ADGPVADVYT 456

Query: 444 AINAVRRRGYGNPSNTSACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYK 503
           AIN +R R        +  +LP GL +   R+ +R ER  EL+FEGHR  D  RW I   
Sbjct: 457 AINRIRTRA-------TMPNLPAGLTKAQMRDRIRNERRVELAFEGHRYWDARRWNIAKD 509

Query: 504 TVQATAKELGYWWEGTGSPNYSVATYTEEGK-----HELFPIPQRDMDLCIQFNQNPKW 557
                    G     TGS  ++   Y  E +       L+PI QR++    +  QNP W
Sbjct: 510 AFNGPF--TGMKIVKTGS-TFTYTPYKIEDRIFKEFMNLYPIQQREILANPKLVQNPGW 565