Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 560 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  102 bits (253), Expect = 5e-26
 Identities = 124/545 (22%), Positives = 215/545 (39%), Gaps = 64/545 (11%)

Query: 47  LGVYRTNTLDAMYGYYLSILFNLGTDISQVEGSGNENFRIIPTNSFP-------TTQSEV 99
           LG+     L  +Y Y  +    +G D+  ++ + ++     P ++         +  + V
Sbjct: 46  LGIQAKTFLADIYSYLPNGYNRIGNDV--LDAASDDAISSSPASTIEYFVNGRISAVATV 103

Query: 100 QQTWAALYTGIYRANDFLERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGN 159
             +W   Y  I RAN FL  I           K L   + +EAR LR + YFEL++RFG 
Sbjct: 104 DNSWDNNYKTIRRANIFLANID----VVPLNQKGLKVFWKSEARILRAIAYFELIKRFGG 159

Query: 160 VVLMTSTQMSNQNPATYVQSAPEKVYEYIEDDLLYACDILPYAT--DDQYRESNDY-RFS 216
           V L+    +   +     ++   +  +Y+ D+    CD L      D+      DY R +
Sbjct: 160 VPLLGDKVLGLDDNIQLPRNTYAECVKYVVDE----CDALKAIARPDNTLAADEDYGRVT 215

Query: 217 KGAALGLLTKVY---ATWAGYPVKDESKWEAAAKTARILVESGKHGLLKDYEQLWKNTCN 273
           +G AL L  ++    A+    P  D +KW AAA+ A+ ++      L   Y  ++    N
Sbjct: 216 QGVALALKARILLYDASPLNNPTNDLTKWAAAAQAAKDVMNLNIFSLTAAYTSVFNTRKN 275

Query: 274 GTWDPTESLIEISFYSPTVSGNSD----PVGRIGKWNGVKTTAIAGVRGSCAANVKVVHT 329
                      I  Y   V+ + +    PVG         T   A   G  +   ++V  
Sbjct: 276 SE--------VILAYQRAVTFDLETRNAPVG--------YTATNASGSGYTSPTQELVDA 319

Query: 330 FVLDWREDVSDIRRDLSIAN---------YQYTDTKKSLWVAGASDTDESAAEKDADPTK 380
           F +     +SD     + A+         Y+      + W+     T +   ++      
Sbjct: 320 FDMANGRAISDPASGYNAADPYTGRDPRFYRTIFHNNAKWLNRIIQTYDGGLDRPGSAVN 379

Query: 381 AQKNKQNYTPAKWDIQKYVTTNSFINNDKSNVNWYFLRYADVLLLYAEALNEWKHGP--D 438
            Q  +  Y   K+  + + + + + N      N+   RYA++LL YAEA+NE        
Sbjct: 380 VQ-TRTGYYMRKFLNETFESASVYSNQTH---NFPIFRYAEILLNYAEAMNEAADNAVNR 435

Query: 439 AEAYNAINAVRRRGYGNPSNTSACD--LPQGLDETSFREAVRKERSYELSFEGHRRQDLI 496
            EA+N + A+R R      +T+     L   + +   REA+R ER  E++FE  R  D+ 
Sbjct: 436 TEAFNQLKALRLRAGIAIGSTAGYQHGLKTTMTQAEMREAIRHERRVEMAFEEQRFWDIR 495

Query: 497 RWGIYYKTVQATAKELGYWWEGTGSPNY----SVATYTEEGKHELFPIPQRDMDLCIQFN 552
           RW I    +  T   +       G+ +Y    ++    +  K   +PI   +++      
Sbjct: 496 RWKIAGTVLNGTLHGMQIIKNANGTFSYTQTNALNVSFDAAKMYRYPIAASEVNKNRNLT 555

Query: 553 QNPKW 557
           QNP W
Sbjct: 556 QNPGW 560