Pairwise Alignments

Query, 330 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 365 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  123 bits (308), Expect = 8e-33
 Identities = 76/269 (28%), Positives = 143/269 (53%), Gaps = 23/269 (8%)

Query: 70  TSKYLLQYSVVGLGFGMNLQSALASGKEGMEFTVISVVGTLLIGWFIGRKIFKIDRNTSY 129
           +++ LL+ +V   G  ++LQ     G  G+  +V+ VV TL+IG + G KI K+DR+T+ 
Sbjct: 81  SARKLLRIAVAFFGLRVSLQEIAQVGVPGLAESVLIVVSTLVIGTWAGMKIMKLDRDTAL 140

Query: 130 LISSGTAICGGSAIAAIGPVLRAKDSEMSVALGTIFILNAIALFIFPAIGHA--LDMTEH 187
           L ++G+AICG +A+ A    L++K  + ++A+G++ +   +++F++P +  A  L +   
Sbjct: 141 LTAAGSAICGAAAVLAFESTLQSKPHKSAMAVGSVVLFGTLSMFLYPVLFKAGWLHLDTV 200

Query: 188 QFGTWAAIAIHDTSSVVGAGAAYGEEALKVATTIKLTRALWIIPM--------------- 232
             G +    IH+ + VVGA +    EA  +AT +K+TR + ++P+               
Sbjct: 201 GAGLFFGGTIHEVAQVVGAASNVSPEATHIATIVKMTRVMLLVPVLLVVGMWVNRSARRD 260

Query: 233 ---AFATSFIFKSKGQKISIPWFIFFFILAMIANTYLLNGVPQLG-AAINGIARKTLTIT 288
              A A      S  +K++IPWF   F+  ++ N+  L+ +P+   + +N +    LT+ 
Sbjct: 261 SAAAGAQDGAHGSAPRKLAIPWFALGFLAFVVINS--LHVLPEAATSTLNTLDTFALTMA 318

Query: 289 MFFIGASLSLDVLRSVGVKPLIQGVLLWV 317
           M  +G    +  +R  G + L  G +L+V
Sbjct: 319 MTALGIETRIAQIRQAGPRALTTGFILYV 347



 Score = 34.3 bits (77), Expect = 5e-06
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 257 ILAMIANTYLLNGVPQLGAA-INGIARKTLTITMFFIGASLSLDVLRSVGVKPLIQGVLL 315
           +   I    L +G+P   AA +N  ARK L I + F G  +SL  +  VGV  L + VL+
Sbjct: 57  VAGAIYGNALRDGMPASWAAGVNFSARKLLRIAVAFFGLRVSLQEIAQVGVPGLAESVLI 116

Query: 316 WV 317
            V
Sbjct: 117 VV 118