Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Klebsiella michiganensis M5al

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 7/182 (3%)

Query: 7   QELVSRSQQDDKRAFALLVSEFQPLVFRLAFRLLCDEEEARDITQETFVKVWLSLKTYNQ 66
           Q LV R Q+ D++AF LLV  +Q  V  L  R +   + A D+ QE+FVK W +L ++  
Sbjct: 8   QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPPGDIA-DVVQESFVKAWRALDSFRG 66

Query: 67  ENRLSTWLYKITCNTCYDRLRSLRHSPLDNESAFSDSVNIPSDDHI-EIS-----LSNKQ 120
           ++   TWLY+I  NT  + L +    P  ++   +D+ N  S   + EIS     + +++
Sbjct: 67  DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDANDAENFESGGALKEISNPENLMLSEE 126

Query: 121 LKELILRYTNELPPQQKLVFTLRDVEELEVAEVQIITGLSPEKIKSTLYLARKNIRNKMN 180
           L++++ R    LP   ++  TLR+++ +   E+  I       ++S ++ AR+ I NK+ 
Sbjct: 127 LRQIVFRTIESLPEDLRMAITLRELDGMSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186

Query: 181 QI 182
            +
Sbjct: 187 PL 188